View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11014_low_2 (Length: 913)
Name: NF11014_low_2
Description: NF11014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11014_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 799; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 799; E-Value: 0
Query Start/End: Original strand, 11 - 833
Target Start/End: Complemental strand, 8132182 - 8131360
Alignment:
| Q |
11 |
agcagcacagaaatgtccaagatgtgaatcaacaaacacaaagttctgctactacaacaactacaatctttcacaaccacgccatttttgcaaaacttgt |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8132182 |
agcagcacagaaatgtccaagatgtgaatcaacaaacacaaagttctgctactacaacaactacaatctttcacaaccacgccatttttgcaaaacttgt |
8132083 |
T |
|
| Q |
111 |
cgtcgttattggactaaaggtggtgcacttcgaaacgttcctgttggaggtggttgtagaaggaacaataaaagaagaagaggaaattcagtatcaaaat |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8132082 |
cgtcgttattggactaaaggtggtgcacttcgaaacgttcctgttggaggtggttgtagaaggaacaataaaagaagaaaaggaaattcagtatcaaaat |
8131983 |
T |
|
| Q |
211 |
cacctctaaaacctaatcataatgatcatctccagatcggtaccggtgctgctgctggtggttctagctcagcaagtgcaaattcttcttctaataatgg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8131982 |
cacctctaaaacctaatcataatgatcatctccagatcggtaccggtgctgctgctggtggttctagctcagcaagtgcaaattcttcttctaataatgg |
8131883 |
T |
|
| Q |
311 |
ttgcactaattctaatctgaatattggaatgcctaattttccaacacaatttccattcgtaacctctttacatcgtcataacgacaatagttatgcttct |
410 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8131882 |
ttgcactaattctaatgtgaatattggaatgcctaattttccaacacaatttccattcgtaacctctttacatcgtcataacgacaatagttacgcttct |
8131783 |
T |
|
| Q |
411 |
gagggcattggttctttgttggccaaaaatatgagcaatagtactactactaatgttgagtttcaacttggtagtggttcttcttcaattggtaatggta |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8131782 |
gagggcattggttctttgttggccaaaaatatgagcaatagtactactactaatgttgagtttcaacttggtagtggttcttcttcaattggtaatggta |
8131683 |
T |
|
| Q |
511 |
atggtggctctttgttgatatcaaatggcattggtgaacaatggaggtttccaaattcgttacaaattcatcagcagcaacaatatcaacaattcccttt |
610 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8131682 |
atggtggctctttgttgatatcaaatggcattggtgaacaatggaggtttccaaattcgctacaaattcatcagcagcaacaatatcaacaattcccttt |
8131583 |
T |
|
| Q |
611 |
cttgagtaatttgcaaccacaaattggactatttcaatttggtggagagaacaatggtgaaccacaaagaaatttgtttcgttcgaaggaaacgtattct |
710 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
8131582 |
cttgagtaatttgcaaccacaaattggactatttcaatttggtggagagaacaatggtgaaccacaaagaaatttgtttcgttctaaggaaacatattct |
8131483 |
T |
|
| Q |
711 |
tcaagtgttagtattggaatgatgcctcaagttaatacagttaaagtggaagaaaacaatcatcaaggtttgagtttgccaaaaaatctcttgagtggtt |
810 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8131482 |
tcaagtgttagtattggaatgatgcctcaagttaatacagttaaagtggaagaaaacaatcatcaaggtttgagtttgccaaaaaatctcttgagtggtt |
8131383 |
T |
|
| Q |
811 |
caggaaatagtaatgatctattt |
833 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
8131382 |
caggaaatagtaatgatctattt |
8131360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 166
Target Start/End: Original strand, 21549585 - 21549730
Alignment:
| Q |
21 |
aaatgtccaagatgtgaatcaacaaacacaaagttctgctactacaacaactacaatctttcacaaccacgccatttttgcaaaacttgtcgtcgttatt |
120 |
Q |
| |
|
||||||||||| ||||| || || ||||||||||| ||||||| ||||||||||| ||| || || || || || || ||||| ||||||| | |||| |
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| T |
21549585 |
aaatgtccaaggtgtgattccaccaacacaaagttttgctacttcaacaactacagtctctcgcagccgcgacacttctgcaaggcttgtcgaaggtatt |
21549684 |
T |
|
| Q |
121 |
ggactaaaggtggtgcacttcgaaacgttcctgttggaggtggttg |
166 |
Q |
| |
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|||| || |||||||| ||| ||| || || ||||| |||||||| |
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| T |
21549685 |
ggacaaagggtggtgcccttagaagtgtcccggttggcggtggttg |
21549730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 1e-25; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 5211320 - 5211236
Alignment:
| Q |
21 |
aaatgtccaagatgtgaatcaacaaacacaaagttctgctactacaacaactacaatctttcacaaccacgccatttttgcaaaa |
105 |
Q |
| |
|
||||||||| | |||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5211320 |
aaatgtccacgttgtgaatcaaacaacacaaaattctgctactacaacaactacaatctctcacaaccacgccatttttgcaaaa |
5211236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 163
Target Start/End: Original strand, 33823812 - 33823951
Alignment:
| Q |
24 |
tgtccaagatgtgaatcaacaaacacaaagttctgctactacaacaactacaatctttcacaaccacgccatttttgcaaaacttgtcgtcgttattgga |
123 |
Q |
| |
|
||||||||||| || ||| |||||||||| || || |||||||||||||| || || | || || |||||||| ||||| || || ||||||||||||| |
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|
| T |
33823812 |
tgtccaagatgcgactcatcaaacacaaaattttgttactacaacaactataacctcactcagcctcgccatttctgcaagacatgccgtcgttattgga |
33823911 |
T |
|
| Q |
124 |
ctaaaggtggtgcacttcgaaacgttcctgttggaggtgg |
163 |
Q |
| |
|
| ||||| ||||| | |||||||||| |||||||||| |
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| T |
33823912 |
caaaaggaggtgctttaagaaacgttccaattggaggtgg |
33823951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 28437307 - 28437392
Alignment:
| Q |
21 |
aaatgtccaagatgtgaatcaacaaacacaaagttctgctactacaacaactacaatctttcacaaccacgccatttttgcaaaac |
106 |
Q |
| |
|
||||||||||||||||| || |||||||||| ||||| |||||||||||||||| ||| | |||||| | ||||| |||||||| |
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|
| T |
28437307 |
aaatgtccaagatgtgattctccaaacacaaaattctgttactacaacaactacagtctcactcaaccaagacatttctgcaaaac |
28437392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 178
Target Start/End: Complemental strand, 3946004 - 3945850
Alignment:
| Q |
24 |
tgtccaagatgtgaatcaacaaacacaaagttctgctactacaacaactacaatctttcacaaccacgccatttttgcaaaacttgtcgtcgttattgga |
123 |
Q |
| |
|
|||||| | ||||| ||| ||||||||||||| || |||||||||||||||| | | ||||||||| | ||||| || ||| |||| |||||||||| |
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|
| T |
3946004 |
tgtccacgttgtgactcatcaaacacaaagttttgttactacaacaactacagtttgtcacaaccaagacatttctgtaaagcttgcaaacgttattgga |
3945905 |
T |
|
| Q |
124 |
ctaaaggtggtgcacttcgaaacgttcctgttggaggtggttgtagaaggaacaa |
178 |
Q |
| |
|
| | ||||||| | ||| |||| ||||||||||| ||||||| ||||| ||||| |
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|
| T |
3945904 |
caagaggtggtactcttagaaatgttcctgttggtggtggttacagaagaaacaa |
3945850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 178
Target Start/End: Complemental strand, 22483542 - 22483385
Alignment:
| Q |
21 |
aaatgtccaagatgtgaatcaacaaacacaaagttctgctactacaacaactacaatctttcacaaccacgccatttttgcaaaacttgtcgtcgttatt |
120 |
Q |
| |
|
||||||||||||||||| |||| ||||| || || || ||||||||||| |||| ||||||||||||| | |||| ||||| ||||| | | |||| |
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|
| T |
22483542 |
aaatgtccaagatgtgactcaaacaacaccaaattttgttactacaacaattacagtctttcacaaccaagatatttctgcaagtcttgtaggagatatt |
22483443 |
T |
|
| Q |
121 |
ggactaaaggtggtgcacttcgaaacgttcctgttggaggtggttgtagaaggaacaa |
178 |
Q |
| |
|
|||||||||||||| |||| | || ||||||||||| || || ||| ||| |||||| |
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|
| T |
22483442 |
ggactaaaggtggtacactaaggaatgttcctgttggtggggggtgtcgaaagaacaa |
22483385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 35721705 - 35721757
Alignment:
| Q |
24 |
tgtccaagatgtgaatcaacaaacacaaagttctgctactacaacaactacaa |
76 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| || ||||||||||| ||||| |
|
|
| T |
35721705 |
tgtccaagatgtgattcaacaaacacaaagttttgttactacaacaattacaa |
35721757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 7435185 - 7435247
Alignment:
| Q |
13 |
cagcacagaaatgtccaagatgtgaatcaacaaacacaaagttctgctactacaacaactaca |
75 |
Q |
| |
|
|||||| |||||||||| | ||||||||||| |||||||| || ||||||| ||||||||||| |
|
|
| T |
7435185 |
cagcactgaaatgtccacgttgtgaatcaaccaacacaaaattttgctacttcaacaactaca |
7435247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 13481016 - 13481065
Alignment:
| Q |
24 |
tgtccaagatgtgaatcaacaaacacaaagttctgctactacaacaacta |
73 |
Q |
| |
|
|||||||||||||| ||| | |||||||| |||||||||||||||||||| |
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|
| T |
13481016 |
tgtccaagatgtgactcacccaacacaaaattctgctactacaacaacta |
13481065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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