View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11014_low_20 (Length: 396)
Name: NF11014_low_20
Description: NF11014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11014_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 1329264 - 1328923
Alignment:
| Q |
18 |
cttttgaagttccacagacttgcaattgcgagcattcaataaagataaaataccatgcttacaactggaatggatagaagaacattatgcaatagaaaag |
117 |
Q |
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| T |
1329264 |
cttttgaagttccacagacttgcaattgcgagcattcaataaagataaaataccatgcttacaattggaatggatagaagaacattatgcaatagaaaag |
1329165 |
T |
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| Q |
118 |
agagaagagcatggaaatagaaatggtaaagacttaagaacaaatcatatgctacatgtttctttttcatacacttcatacgtcataataaactnnnnnn |
217 |
Q |
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| T |
1329164 |
agagaagagcgtggaaatagaaatggtaaagacttaagaacaaatcatatgctacatgtttctttttcatacacttcatacgtcataataaactaaaaaa |
1329065 |
T |
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| Q |
218 |
ntctaacagtatgaaagctttaaacttgggatccaaatacaactaattcttaattcggccaattggaagaagatttttcttataaattgcgacctcacaa |
317 |
Q |
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| T |
1329064 |
atctaacagtatgaaagctttaaacttgggatccaaatacaactaattcttaattcggccaattggaagaagatttttcttataaattgcgacctcacaa |
1328965 |
T |
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| Q |
318 |
cagaaaaactcacctttaacacccataccttcaattatttgg |
359 |
Q |
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| T |
1328964 |
cagaaagactcacctttaacacccataccttcaattatttgg |
1328923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 229 - 359
Target Start/End: Complemental strand, 44187717 - 44187587
Alignment:
| Q |
229 |
tgaaagctttaaacttgggatccaaatacaactaattcttaattcggccaattggaagaagatttttcttataaattgcgacctcacaacagaaaaactc |
328 |
Q |
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| T |
44187717 |
tgaaagctttaaacttggaatgcaagtacaactaattcttaattcagccaacaggaataagattttttttacaaattgccacctcacaacagaaaggctc |
44187618 |
T |
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| Q |
329 |
acctttaacacccataccttcaattatttgg |
359 |
Q |
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| T |
44187617 |
gcctttaacacccatatcttcaattgtttgg |
44187587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 52 - 149
Target Start/End: Complemental strand, 44187976 - 44187879
Alignment:
| Q |
52 |
ttcaataaagataaaataccatgcttacaactggaatggatagaagaacattatgcaatagaaaagagagaagagcatggaaatagaaatggtaaaga |
149 |
Q |
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| T |
44187976 |
ttcaataaagacaaaatactatgcttacaattggaatcgaaagaagaacaatatacaatagaaaagagagaaaaacatagaaataaaaatggtaaaga |
44187879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 149
Target Start/End: Complemental strand, 4878476 - 4878422
Alignment:
| Q |
95 |
aagaacattatgcaatagaaaagagagaagagcatggaaatagaaatggtaaaga |
149 |
Q |
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| T |
4878476 |
aagaacaatatgcaatatgaaagagagcagagcattgaaataaaaatggtaaaga |
4878422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 358
Target Start/End: Complemental strand, 44186353 - 44186279
Alignment:
| Q |
284 |
aagaagatttttcttataaattgcgacctcacaacagaaaaactcacctttaacacccataccttcaattatttg |
358 |
Q |
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|||||| ||||||||||||||||| | | |||||| ||| |||| ||||||||||||| | |||||||| |||| |
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| T |
44186353 |
aagaaggtttttcttataaattgcaaagtgacaacaaaaatactcccctttaacacccagatcttcaattgtttg |
44186279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 26542464 - 26542408
Alignment:
| Q |
93 |
agaagaacattatgcaatagaaaagagagaagagcatggaaatagaaatggtaaaga |
149 |
Q |
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| T |
26542464 |
agaagaacatcatacaatagaaaaaagataagagcgtggaaataaaaatggtaaaga |
26542408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 307
Target Start/End: Complemental strand, 6432874 - 6432798
Alignment:
| Q |
231 |
aaagctttaaacttgggatccaaatacaactaattcttaattcggccaattggaagaagatttttcttataaattgc |
307 |
Q |
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||||||||||||||| ||| |||| | |||||| || | |||| ||||||||||||| |||||| |||||||||| |
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| T |
6432874 |
aaagctttaaacttgagatgcaaaaataactaactcctctttcgaccaattggaagaaagtttttcctataaattgc |
6432798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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