View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11014_low_24 (Length: 334)
Name: NF11014_low_24
Description: NF11014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11014_low_24 |
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| [»] scaffold0568 (2 HSPs) |
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Alignment Details
Target: scaffold0568 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: scaffold0568
Description:
Target: scaffold0568; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 40 - 323
Target Start/End: Original strand, 1344 - 1627
Alignment:
| Q |
40 |
cttccccaaatcaaaacttaaaactattttttctcttctttcgcataccgccgacaatccactcctttagcgtttgattccagtgtcccagtttccccaa |
139 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1344 |
cttccccaaatcaaaacttaaaactattttttctcttctttcgcataccgccgacaatccactcctttagcgtttgattccagtgttccagtttccccaa |
1443 |
T |
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| Q |
140 |
tttatttaaggtttcagatcttgttcatttctcggtgatagtgacgacgcggtcgttgtgccaagataagtacaagggagattctatagttcagatgatt |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1444 |
tttatttaaggtttcagatcttgttcatttctcggtgatagtgacgacgcggtcgtcgtgccaagataagtacaagggagattctatagttcagatgatt |
1543 |
T |
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| Q |
240 |
ttcgatgattctttgtccattaatggccacactttcacctttgatttcgttgttgatgtcgaaactagtcaggtatggttctct |
323 |
Q |
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| T |
1544 |
ttcgatgattctttgtccattaatggccgcactttcacctttgatttcgttgttgatgtcgaaactagtcaggtatggttctct |
1627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 40 - 323
Target Start/End: Original strand, 7946 - 8229
Alignment:
| Q |
40 |
cttccccaaatcaaaacttaaaactattttttctcttctttcgcataccgccgacaatccactcctttagcgtttgattccagtgtcccagtttccccaa |
139 |
Q |
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| T |
7946 |
cttccccaaatcaaaacttaaaactattttttctcttctttcgcataccgccgacaatccactcctttagcgtttgattccagtgttccagtttccccaa |
8045 |
T |
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| Q |
140 |
tttatttaaggtttcagatcttgttcatttctcggtgatagtgacgacgcggtcgttgtgccaagataagtacaagggagattctatagttcagatgatt |
239 |
Q |
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| T |
8046 |
tttatttaaggtttcagatcttgttcatttctcggtgatagtgacgacgcggtcgtcgtgccaagataagtacaagggagattctatagttcagatgatt |
8145 |
T |
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| Q |
240 |
ttcgatgattctttgtccattaatggccacactttcacctttgatttcgttgttgatgtcgaaactagtcaggtatggttctct |
323 |
Q |
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| T |
8146 |
ttcgatgattctttgtccattaatggccgcactttcacctttgatttcgttgttgatgtcgaaactagtcaggtatggttctct |
8229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 41 - 324
Target Start/End: Original strand, 17059431 - 17059713
Alignment:
| Q |
41 |
ttccccaaatcaaaacttaaaactattttttctcttctttcgcataccgccgacaatccactcctttagcgtttgattccagtgtcccagtttccccaat |
140 |
Q |
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| T |
17059431 |
ttccccaaatcaaaacttaaaactattttttctcttctttcgcataccgccgacaatccactcctttagcgtttgattccagtgtcccagtttccccaat |
17059530 |
T |
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| Q |
141 |
ttatttaaggtttcagatcttgttcatttctcggtgatagtgacgacgcggtcgttgtgccaagataagtacaagggagattctatagttcagatgattt |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17059531 |
ttatttaaggtttcagatcttgttcatttctcggtgata-tgcatagggggtcgttgtgccaagataagtacaagggagattctatagttcagatgattt |
17059629 |
T |
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| Q |
241 |
tcgatgattctttgtccattaatggccacactttcacctttgatttcgttgttgatgtcgaaactagtcaggtatggttctctg |
324 |
Q |
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| T |
17059630 |
tcgatgattctttgtccattaatggccacactttcacctttgatttcgttgttgatgtcgaaactagtcaggtatggttctctg |
17059713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 195 - 272
Target Start/End: Original strand, 5523820 - 5523897
Alignment:
| Q |
195 |
ttgtgccaagataagtacaagggagattctatagttcagatgattttcgatgattctttgtccattaatggccacact |
272 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
5523820 |
ttgtgccaagataagtacaatggagattctatagttcagatgattttttatgattctttgtccattaatggccgcact |
5523897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 316
Target Start/End: Original strand, 38289406 - 38289499
Alignment:
| Q |
223 |
ctatagttcagatgattttcgatgattctttgtccattaatggccacactttcacctttgatttcgttgttgatgtcgaaactagtcaggtatg |
316 |
Q |
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|||||||||||| |||| || ||||||||| ||||||||||||||||| || || ||||||| ||||| || |||||| ||| ||||||||| |
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| T |
38289406 |
ctatagttcagaaaatttccggtgattctttatccattaatggccacacctttacgtttgattccgttgccgacgtcgaagctactcaggtatg |
38289499 |
T |
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