View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11014_low_25 (Length: 303)
Name: NF11014_low_25
Description: NF11014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11014_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 34758401 - 34758685
Alignment:
| Q |
1 |
accaaaagacattttaggaaaatccacaccagcaaacaaccaccacaaaagtagtaagattaatcatggcaaatacacttgtggttattttgtcttaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34758401 |
accaaaagacattttaggaaaatccacaccggcaaacaaccaccacaaaagtagtaagattaatcatggcaaatacacttgtggttattttgtcttaaaa |
34758500 |
T |
|
| Q |
101 |
tagtagttttatgattggaaatatgtgttaaaaaaggcttcacagtaatttaaattgttattttgaactgcttgttcaacattctttttagtattattat |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
34758501 |
tagtagttttatgattggaaatatgtgttagaaaaggcttcacagtaatttaaattgttactttgaactgcttgttcaacattctttttagtattattat |
34758600 |
T |
|
| Q |
201 |
tggatgaaagtagaaattagaaaaataaacatcatggttattggtgaagttcagcttttgagtatgaagaaaccatatacagtaa |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34758601 |
tggatgaaagtagaaattagaaaaataaacatcatggttattggtgaagttcagcttttgagtatgaagaaaccatatacagtaa |
34758685 |
T |
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