View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11014_low_26 (Length: 303)

Name: NF11014_low_26
Description: NF11014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11014_low_26
NF11014_low_26
[»] chr3 (6 HSPs)
chr3 (1-292)||(19199131-19199423)
chr3 (55-265)||(6777837-6778048)
chr3 (64-280)||(1596237-1596454)
chr3 (64-280)||(34437781-34437997)
chr3 (4-51)||(34437674-34437721)
chr3 (180-269)||(21565966-21566054)
[»] chr1 (8 HSPs)
chr1 (59-282)||(43782700-43782924)
chr1 (64-280)||(48999827-49000044)
chr1 (59-280)||(45152677-45152899)
chr1 (140-280)||(40553596-40553736)
chr1 (55-292)||(3375894-3376131)
chr1 (140-269)||(33297214-33297343)
chr1 (3-53)||(3375795-3375845)
chr1 (1-51)||(45152954-45153003)
[»] scaffold0018 (1 HSPs)
scaffold0018 (59-292)||(180324-180558)
[»] chr7 (3 HSPs)
chr7 (61-280)||(12627421-12627641)
chr7 (54-292)||(1326840-1327079)
chr7 (140-271)||(38457493-38457624)
[»] chr5 (6 HSPs)
chr5 (61-244)||(26653528-26653712)
chr5 (61-244)||(26925113-26925297)
chr5 (64-270)||(13274093-13274300)
chr5 (140-280)||(2742997-2743137)
chr5 (140-196)||(21101423-21101479)
chr5 (148-269)||(24209211-24209332)
[»] chr8 (3 HSPs)
chr8 (55-280)||(37227721-37227947)
chr8 (125-271)||(14096700-14096846)
chr8 (4-51)||(37227623-37227670)
[»] chr2 (4 HSPs)
chr2 (55-271)||(31116886-31117103)
chr2 (161-292)||(28035635-28035766)
chr2 (4-51)||(28035925-28035972)
chr2 (3-51)||(31116787-31116835)
[»] chr4 (11 HSPs)
chr4 (149-271)||(25147344-25147466)
chr4 (64-280)||(42705139-42705356)
chr4 (140-281)||(39465347-39465486)
chr4 (4-59)||(3681088-3681143)
chr4 (4-51)||(25147612-25147659)
chr4 (4-51)||(32305590-32305637)
chr4 (4-51)||(39465623-39465670)
chr4 (174-280)||(32307880-32307986)
chr4 (187-280)||(3680825-3680918)
chr4 (140-177)||(32305774-32305811)
chr4 (7-51)||(42705035-42705079)
[»] scaffold0251 (2 HSPs)
scaffold0251 (60-271)||(16977-17192)
scaffold0251 (4-51)||(16875-16922)
[»] scaffold0408 (1 HSPs)
scaffold0408 (125-271)||(7042-7188)
[»] chr6 (3 HSPs)
chr6 (140-280)||(6285814-6285954)
chr6 (127-244)||(35014337-35014454)
chr6 (179-269)||(2029728-2029818)
[»] scaffold0007 (1 HSPs)
scaffold0007 (140-211)||(257345-257416)
[»] scaffold0010 (1 HSPs)
scaffold0010 (171-269)||(32353-32451)


Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 19199423 - 19199131
Alignment:
Q  1 gtgtagtcaggaatggacgcatggaggttcataataggatgtgatactctacaaaactagatcacccctctcctgctggctgagggcatgtagag-aaac 99  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||| ||||    
T  19199423 gtgtagtcaggaatggacgcaggggggttcataataggatgtgatactctacaaaaatagatcacccctctcctactggctgaggacatgtagagcaaac 19199324  T
Q  100 tctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccact 199  Q
    ||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||| ||| | |||||||| ||||||||||| ||||||||    
T  19199323 tctgcgaaggccataaccacgtcccctgccgtaagaggcccaatgtttgtaggaggcctgggaacagtttggacatactagtactgcctaagaacccact 19199224  T
Q  200 atggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgtcctgaaaggacgtaatgtcttgttgtctct 292  Q
     ||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||| || |||||||||||||||| |||||||||    
T  19199223 ctggcaagtgacataccctcttgtatttgccggccatgatccatccggagcactagcatatgttctaaaaggacgtaatgtctcgttgtctct 19199131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 55 - 265
Target Start/End: Complemental strand, 6778048 - 6777837
Alignment:
Q  55 aactagatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtagga 153  Q
    |||| |||||||||||| ||| ||||||||| ||||||||| |||||| | |||||||   || |||||  |||||| || | || ||||||||||||||    
T  6778048 aactggatcacccctctgctgatggctgaggacatgtagagcaaactccgtgaaggcctgggccacgtcatctgccgcaataagctcaatgtctgtagga 6777949  T
Q  154 ggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtact 253  Q
    | |||  ||||||||| ||||||| |||||||||||| ||||| || | |||||||||  ||| || |||  ||| |||||||||||||||  ||| ||     
T  6777948 gccctcagaatagtctggacatacccgtactgcctaagaaccctctctagcaagtgacggaccatcctgtcgttgtcggccatgatccatccggagcacc 6777849  T
Q  254 agcatatgtcct 265  Q
    ||||||||||||    
T  6777848 agcatatgtcct 6777837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 64 - 280
Target Start/End: Original strand, 1596237 - 1596454
Alignment:
Q  64 acccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctggga 162  Q
    |||||||| ||| ||| ||||| ||||||||| ||||||   |||||||   || |||||  |||||| || | || ||||||||||||||| |||  ||    
T  1596237 acccctctgctgatgggtgaggacatgtagagcaaactccatgaaggcctgggccacgtcatctgccgcaataagctcaatgtctgtaggagccctcaga 1596336  T
Q  163 atagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgt 262  Q
    ||||||| |||||||  ||||||||||| ||||| || |||||||||||  ||| || |||   ||| ||||||||||||||  |||||| |||||||||    
T  1596337 atagtctggacatacctgtactgcctaagaacccgctttggcaagtgacggaccatcctgtcgctgctggccatgatccatccggagtaccagcatatgt 1596436  T
Q  263 cctgaaaggacgtaatgt 280  Q
    ||||||||| ||| ||||    
T  1596437 cctgaaagggcgtgatgt 1596454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 64 - 280
Target Start/End: Original strand, 34437781 - 34437997
Alignment:
Q  64 acccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctggga 162  Q
    |||||| ||||| ||||||||| ||||||||| |||||| | |||| || | || |||||  | |||| || | || ||||||| ||||||| |||||||    
T  34437781 acccctatcctgatggctgaggacatgtagagcaaactccgtgaagacc-tggccacgtcatccgccgcaataagctcaatgtcagtaggagccctggga 34437879  T
Q  163 atagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgt 262  Q
    |||||||  |||||| |||||||||||| ||||| || ||| || ||||  ||| || ||    | ||| ||||||||||||  |||||| |||||||||    
T  34437880 atagtctgtacatacccgtactgcctaagaacccgctctggaaattgacggaccatcctgccactaccgaccatgatccatccggagtaccagcatatgt 34437979  T
Q  263 cctgaaaggacgtaatgt 280  Q
    ||||||||| ||| ||||    
T  34437980 cctgaaagggcgtgatgt 34437997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 34437674 - 34437721
Alignment:
Q  4 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 51  Q
    ||||||||||||| |||| ||||||||| |||||||||||||||||||    
T  34437674 tagtcaggaatgggcgcagggaggttcacaataggatgtgatactcta 34437721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 269
Target Start/End: Complemental strand, 21566054 - 21565966
Alignment:
Q  180 gtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgtcctgaaa 269  Q
    ||||||||| | ||||| ||  ||||||||||| ||| |||| | |||| ||||||||||||||| ||||||| |||| | |||||||||    
T  21566054 gtactgcctcagaacccgctcgggcaagtgacacaccatcttttgtttgtcggccatgatccatccagagtac-agcacacgtcctgaaa 21565966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 5e-62; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 59 - 282
Target Start/End: Original strand, 43782700 - 43782924
Alignment:
Q  59 agatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcc 157  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||   | |||||||||| ||||||| || || |||||||||||||||||||||||||     
T  43782700 agatcacccctctcctgctggctgaggacatgtagagcaaactccatggaggccatagccacgtcccttgacgcaagaggcccaatgtctgtaggaggca 43782799  T
Q  158 tgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagca 257  Q
    |||| ||||||| |||||||||||| ||||||| ||| | || |||||||||||| |||||| ||| ||||||| |||||||||||| ||||||||||||    
T  43782800 tgggtatagtctggacatactcgtattgcctaagaactcgctctggcaagtgacagaccctcatgtctttgccgaccatgatccatccagagtactagca 43782899  T
Q  258 tatgtcctgaaaggacgtaatgtct 282  Q
    |||||| ||||||| ||||||||||    
T  43782900 tatgtcgtgaaagggcgtaatgtct 43782924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 64 - 280
Target Start/End: Complemental strand, 49000044 - 48999827
Alignment:
Q  64 acccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctggga 162  Q
    |||||| ||||| ||||||||| ||||||||| |||||| | |||||||  ||| |||||  | |||| || | || ||||||||||||||| |||||||    
T  49000044 acccctatcctgatggctgaggacatgtagagcaaactccgtgaaggcctgagccacgtcatccgccgcaataagctcaatgtctgtaggagccctggga 48999945  T
Q  163 atagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgt 262  Q
    ||||||||||||||| |||||||||||| ||||| || |||||||||||  ||| || |||  |||||||||||||||||||  |||||| |||||||||    
T  48999944 atagtctagacatacccgtactgcctaagaacccgctctggcaagtgacggaccatcctgtcgttgccggccatgatccatccggagtaccagcatatgt 48999845  T
Q  263 cctgaaaggacgtaatgt 280  Q
    ||||||||| ||| ||||    
T  48999844 cctgaaagggcgtgatgt 48999827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 59 - 280
Target Start/End: Complemental strand, 45152899 - 45152677
Alignment:
Q  59 agatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcc 157  Q
    ||||||||| ||||| | ||||||||  ||||||||| ||||||   |||||||||||| || ||| ||| || |||||||||||||||||||||| |||    
T  45152899 agatcacccatctccagttggctgagaacatgtagagcaaactccatgaaggccatagccacatccgctgtcgcaagaggcccaatgtctgtaggatgcc 45152800  T
Q  158 tgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagca 257  Q
    | |||| ||||| ||||||| || ||||||||| ||||| || | |||||| |   |||| | ||| ||||||||||||||||||||| |||||| | ||    
T  45152799 taggaacagtctggacatacccgaactgcctaagaacccgctctagcaagtaatgaacccgcatgtctttgccggccatgatccatctggagtaccaaca 45152700  T
Q  258 tatgtcctgaaaggacgtaatgt 280  Q
    |||||||||||||| ||| ||||    
T  45152699 tatgtcctgaaagggcgtgatgt 45152677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 140 - 280
Target Start/End: Original strand, 40553596 - 40553736
Alignment:
Q  140 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat 239  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| || |||||||||||  ||| || |||   |||||||||||||    
T  40553596 caatgtctgtaggagccctgggaatagtctggacatactcgtactgcctaagaacccgctctggcaagtgacggaccatcctgtcgctgccggccatgat 40553695  T
Q  240 ccatctagagtactagcatatgtcctgaaaggacgtaatgt 280  Q
    |||||  |||||| |||||||||| ||||||| ||| ||||    
T  40553696 ccatccggagtaccagcatatgtcatgaaagggcgtgatgt 40553736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 55 - 292
Target Start/End: Original strand, 3375894 - 3376131
Alignment:
Q  55 aactagatcacccctctcctgctggctgagggcatgtagagaaa-ctctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtagga 153  Q
    ||||||||||||| ||||||||||||||||| |||||||||||| |||   ||||| |||||| || ||| ||| |  |||||||||||| |||||||||    
T  3375894 aactagatcaccc-tctcctgctggctgaggacatgtagagaaaactccatgaaggtcatagccacctcctctggcacaagaggcccaatatctgtagga 3375992  T
Q  154 ggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtact 253  Q
    |  ||||||  ||||| |||||||  ||| ||||||| ||||| || |||||||||||  ||| || ||| | | ||||||||||||||||  ||||||     
T  3375993 gctctgggaccagtctggacatacatgtattgcctaagaacccgctctggcaagtgacggaccatcctgtctctaccggccatgatccatccggagtacc 3376092  T
Q  254 agcatatgtcctgaaaggacgtaatgtcttgttgtctct 292  Q
    |  ||||||||||||||| ||  |||||| || ||||||    
T  3376093 aaaatatgtcctgaaagggcgccatgtctcgtcgtctct 3376131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 140 - 269
Target Start/End: Original strand, 33297214 - 33297343
Alignment:
Q  140 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat 239  Q
    ||||||||||||||| |||||||||||||| | ||||| |||||||||||| ||||| || |||||||||||  ||| || |||   || ||||||||||    
T  33297214 caatgtctgtaggagccctgggaatagtctggtcatacccgtactgcctaagaacccgctctggcaagtgacggaccatcctgtcgctgtcggccatgat 33297313  T
Q  240 ccatctagagtactagcatatgtcctgaaa 269  Q
    |||||  |||||| ||||||||||||||||    
T  33297314 ccatccggagtaccagcatatgtcctgaaa 33297343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 3375795 - 3375845
Alignment:
Q  3 gtagtcaggaatggacgcatggaggttcataataggatgtgatactctaca 53  Q
    |||||||||||||| |||| || |||||| ||||||||||| |||||||||    
T  3375795 gtagtcaggaatggccgcaggggggttcacaataggatgtgctactctaca 3375845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 45153003 - 45152954
Alignment:
Q  1 gtgtagtcaggaatggacgcatggaggttcataataggatgtgatactcta 51  Q
    |||||||||||||||| |||| || |||||| |||||||||||||||||||    
T  45153003 gtgtagtcaggaatggccgcaggg-ggttcacaataggatgtgatactcta 45152954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 59 - 292
Target Start/End: Original strand, 180324 - 180558
Alignment:
Q  59 agatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcc 157  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||   ||||| |||||| | ||||||||||  |||||||||||||| |||||||||||    
T  180324 agatcacccctctcctgctggctgaggacatgtagagcaaactccatgaaggtcatagccatgtcccctgccacaagaggcccaatgtttgtaggaggcc 180423  T
Q  158 tgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagca 257  Q
    |||||| ||||||||||||| |||||||||||| ||||| || |||||||||||| |||||| ||| |||| |||||||||||||||  |||||| | ||    
T  180424 tgggaacagtctagacatacccgtactgcctaagaacccgctctggcaagtgacagaccctcctgtctttggcggccatgatccatccggagtaccaaca 180523  T
Q  258 tatgtcctgaaaggacgtaatgtcttgttgtctct 292  Q
    |||||||||||||| | |||||||| || ||||||    
T  180524 tatgtcctgaaagggcataatgtctcgtcgtctct 180558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 61 - 280
Target Start/End: Complemental strand, 12627641 - 12627421
Alignment:
Q  61 atcacccctctcctgctggctgagggcatgtagagaaa-ctctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctg 159  Q
    |||||||||||  || ||||||||| |||||||||||| |||   |||||||||||| ||  || ||| || || || ||||||||||||||||||||||    
T  12627641 atcacccctctgttgttggctgaggacatgtagagaaaactccatgaaggccatagccaccgcctctggcgcaacagtcccaatgtctgtaggaggcctg 12627542  T
Q  160 ggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcata 259  Q
    |||| ||||| | |||||  ||||||| ||| |||||||| |||||||||||  ||| || ||| |||||||||||||||||||||||||||| | ||||    
T  12627541 ggaacagtctgggcatacctgtactgcataagaacccactctggcaagtgacgaaccatcctgtctttgccggccatgatccatctagagtaccaccata 12627442  T
Q  260 tgtcctgaaaggacgtaatgt 280  Q
    |||||| ||||| ||| ||||    
T  12627441 tgtcctaaaagggcgtcatgt 12627421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 54 - 292
Target Start/End: Original strand, 1326840 - 1327079
Alignment:
Q  54 aaactagatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtagg 152  Q
    |||| ||||||||||||||||| ||||||||| ||||||||| ||||||   ||||||| || | || ||||||| ||  ||||||||||||||||||||    
T  1326840 aaaccagatcacccctctcctgttggctgaggacatgtagagcaaactccatgaaggccgtaaccacctcccctggcgccagaggcccaatgtctgtagg 1326939  T
Q  153 aggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtac 252  Q
    |||| || ||| | | | ||||||| | |||||||||| | |||  | |||||||||||  |||||||||| | ||| ||||||||||||||  ||||||    
T  1326940 aggcatgtgaacaatttggacatacccatactgcctaaaatcccgttctggcaagtgacggaccctcttgtctctgcaggccatgatccatccggagtac 1327039  T
Q  253 tagcatatgtcctgaaaggacgtaatgtcttgttgtctct 292  Q
     | ||||||||||||||||  ||||||||| || ||||||    
T  1327040 caacatatgtcctgaaagggtgtaatgtctcgtcgtctct 1327079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 140 - 271
Target Start/End: Complemental strand, 38457624 - 38457493
Alignment:
Q  140 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat 239  Q
    |||||||||||||||  |||||||||||||  | |||| |||||||||||| |||| ||| |||||||||||  ||| || |||   |||||||||||||    
T  38457624 caatgtctgtaggagcgctgggaatagtctgaatatacccgtactgcctaagaaccaactctggcaagtgacggaccatcatgtcgctgccggccatgat 38457525  T
Q  240 ccatctagagtactagcatatgtcctgaaagg 271  Q
    |||||  |||||| ||||||||||||||||||    
T  38457524 ccatccggagtaccagcatatgtcctgaaagg 38457493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 61 - 244
Target Start/End: Complemental strand, 26653712 - 26653528
Alignment:
Q  61 atcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctg 159  Q
    ||||||||||||||||||| ||||| ||||||||| ||||||    |||| ||| || |||||  || | | |||||||||||||| ||||| ||| |||    
T  26653712 atcacccctctcctgctggttgaggacatgtagagcaaactccatcaaggtcattgccacgtcatctactgcaagaggcccaatgtatgtagaaggtctg 26653613  T
Q  160 ggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatc 244  Q
    |||||||||| ||||||| |||||||||||| |||||  | |||||||||||| ||||||| ||  |||||||||||||||||||    
T  26653612 ggaatagtctggacatacccgtactgcctaagaacccgttctggcaagtgacagaccctctagtcattgccggccatgatccatc 26653528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 61 - 244
Target Start/End: Complemental strand, 26925297 - 26925113
Alignment:
Q  61 atcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctg 159  Q
    ||||||||||||||||||| ||||| ||||||||| ||||||    |||| ||| || |||||  || | | |||||||||||||| ||||| ||| |||    
T  26925297 atcacccctctcctgctggttgaggacatgtagagcaaactccatcaaggtcattgccacgtcatctactgcaagaggcccaatgtatgtagaaggtctg 26925198  T
Q  160 ggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatc 244  Q
    |||||||||| ||||||| |||||||||||| |||||  | |||||||||||| ||||||| ||  |||||||||||||||||||    
T  26925197 ggaatagtctggacatacccgtactgcctaagaacccgttctggcaagtgacagaccctctagtcattgccggccatgatccatc 26925113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 64 - 270
Target Start/End: Complemental strand, 13274300 - 13274093
Alignment:
Q  64 acccctctcctgctggctgagggcatgtagagaaa-ctctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctggga 162  Q
    |||||| ||||| ||||||||| |||||||||||| ||||| |||||||   || |||||  |  ||| || | || ||||| ||||||||| |||||||    
T  13274300 acccctatcctgatggctgaggacatgtagagaaaactctgtgaaggcctaggccacgtcatccaccgcaataagctcaatggctgtaggagccctggga 13274201  T
Q  163 atagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgt 262  Q
    ||||||| ||||||| |||||||||||| ||||| || |||||||||||  ||  || |||   ||||||||||||||||||| |||||| |||||||||    
T  13274200 atagtctggacatacccgtactgcctaagaacccgctctggcaagtgacggacaatcctgtcgctgccggccatgatccatctggagtaccagcatatgt 13274101  T
Q  263 cctgaaag 270  Q
    ||| ||||    
T  13274100 cctaaaag 13274093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 280
Target Start/End: Complemental strand, 2743137 - 2742997
Alignment:
Q  140 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat 239  Q
    ||||||||||||||| |||| ||||||| | ||||||| |||||| ||||| ||||| || || |||||||   ||| || |||   |||||| ||||||    
T  2743137 caatgtctgtaggagccctgagaatagtttggacatacccgtacttcctaagaacccgctctgacaagtgatggaccatcctgtcgctgccggtcatgat 2743038  T
Q  240 ccatctagagtactagcatatgtcctgaaaggacgtaatgt 280  Q
    |||||  |||||| |||||||||||||||||| ||| ||||    
T  2743037 ccatccggagtaccagcatatgtcctgaaagggcgtgatgt 2742997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 21101479 - 21101423
Alignment:
Q  140 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataaccc 196  Q
    ||||||||||||||| ||| |||||||||| ||||||| |||||||||||| |||||    
T  21101479 caatgtctgtaggagccctaggaatagtctggacatacacgtactgcctaagaaccc 21101423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 269
Target Start/End: Original strand, 24209211 - 24209332
Alignment:
Q  148 gtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctag 247  Q
    |||||||| ||| |||| |||||| |||| ||||||||||| | ||||| || |||||||||||    | || ||| |||| ||| |||||||||||  |    
T  24209211 gtaggaggtctgtgaatggtctaggcatagtcgtactgcctcagaacccgctctggcaagtgacggcacatcctgtctttgtcggtcatgatccatccgg 24209310  T
Q  248 agtactagcatatgtcctgaaa 269  Q
    ||||| ||||||||||| ||||    
T  24209311 agtaccagcatatgtcccgaaa 24209332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 55 - 280
Target Start/End: Original strand, 37227721 - 37227947
Alignment:
Q  55 aactagatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtagga 153  Q
    |||| ||| |||||| || || ||||||||| ||||||||| |||||| | |||||||   || |||||  | |||| || | || ||||||||||||||    
T  37227721 aactggatgacccctatcttgatggctgaggacatgtagagcaaactccgtgaaggcctgggccacgtcatccgccgcaataagctcaatgtctgtagga 37227820  T
Q  154 ggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtact 253  Q
    | |||||||||||||| ||||||| |||||||||||| ||||| || ||||||||||   ||| || |||   || |||||||||||||||  |||||||    
T  37227821 gccctgggaatagtctggacatacccgtactgcctaagaacccgctctggcaagtgagggaccatcctgtcgatgtcggccatgatccatccggagtact 37227920  T
Q  254 agcatatgtcctgaaaggacgtaatgt 280  Q
    |||||||||||| ||||| ||| ||||    
T  37227921 agcatatgtcctaaaagggcgtgatgt 37227947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 125 - 271
Target Start/End: Complemental strand, 14096846 - 14096700
Alignment:
Q  125 ctgccgtaagaggcccaatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgta 224  Q
    |||||| |||| || |||||||||||||||||  ||||||||||| |||||||  ||||||||||| || || || |||||||||||  ||| |  |||     
T  14096846 ctgccgcaagaagctcaatgtctgtaggaggcaagggaatagtctggacatacctgtactgcctaagaaaccgctctggcaagtgacggaccattatgtc 14096747  T
Q  225 tttgccggccatgatccatctagagtactagcatatgtcctgaaagg 271  Q
      || |||||||||||||||| |||||||||| ||||||||||||||    
T  14096746 gctgtcggccatgatccatctggagtactagcttatgtcctgaaagg 14096700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 37227623 - 37227670
Alignment:
Q  4 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 51  Q
    ||||||||||||| |||| || |||||| |||||||||||||||||||    
T  37227623 tagtcaggaatggccgcaggggggttcacaataggatgtgatactcta 37227670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 55 - 271
Target Start/End: Original strand, 31116886 - 31117103
Alignment:
Q  55 aactagatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtagga 153  Q
    |||| ||| |||||||| ||| ||||||||| ||||||||| |||||||  ||||| |   || |||||  ||||||||||||||  |||||||||||||    
T  31116886 aactggataacccctctgctgatggctgaggacatgtagagcaaactctatgaaggtctgggccacgtcatctgccgtaagaggcttaatgtctgtagga 31116985  T
Q  154 ggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtact 253  Q
    ||||||||    |||| ||||||| |||||||||||| |||| ||| |||||||||||| ||| || | | | || |||||||||||||||   |||||     
T  31116986 ggcctgggccgtgtctggacatacccgtactgcctaagaaccgactctggcaagtgacagaccatcctatctctgtcggccatgatccatccgaagtacc 31117085  T
Q  254 agcatatgtcctgaaagg 271  Q
    ||||||| ||||||||||    
T  31117086 agcatatatcctgaaagg 31117103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 292
Target Start/End: Complemental strand, 28035766 - 28035635
Alignment:
Q  161 gaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatat 260  Q
    ||||||||| ||||||| | |||||||||| ||||| || | |||||||||  ||| || |||   |||||||||||||| |||  |||||| |||||||    
T  28035766 gaatagtctggacatacccctactgcctaagaacccgctctagcaagtgacggaccatcatgtcgctgccggccatgatctatccggagtaccagcatat 28035667  T
Q  261 gtcctgaaaggacgtaatgtcttgttgtctct 292  Q
    ||| ||||||| ||| |||| |||| ||||||    
T  28035666 gtcttgaaagggcgtgatgtgttgtcgtctct 28035635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 28035972 - 28035925
Alignment:
Q  4 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 51  Q
    ||||||||||||| ||||||| |||||| |||||||||||||||||||    
T  28035972 tagtcaggaatggccgcatgggggttcacaataggatgtgatactcta 28035925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 31116787 - 31116835
Alignment:
Q  3 gtagtcaggaatggacgcatggaggttcataataggatgtgatactcta 51  Q
    |||||||||||||| |||| || |||||| |||||||||||||||||||    
T  31116787 gtagtcaggaatggccgcaggggggttcacaataggatgtgatactcta 31116835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 149 - 271
Target Start/End: Complemental strand, 25147466 - 25147344
Alignment:
Q  149 taggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctaga 248  Q
    |||||| | |||||||||||| ||||||| |||||||||||| ||||| || |||||||||||| ||| || |||   ||||||||||||||||||  ||    
T  25147466 taggagccatgggaatagtctggacatacccgtactgcctaagaacccgctctggcaagtgacagaccatcctgtcgctgccggccatgatccatccgga 25147367  T
Q  249 gtactagcatatgtcctgaaagg 271  Q
    |||| ||||||||||||||||||    
T  25147366 gtaccagcatatgtcctgaaagg 25147344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 280
Target Start/End: Original strand, 42705139 - 42705356
Alignment:
Q  64 acccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctggga 162  Q
    |||||||| ||| ||||||||| ||||||||| |||||| | |||||||   || |||||  ||| || || | || ||||||||||||||| |||||||    
T  42705139 acccctctgctgatggctgaggacatgtagagcaaactccgtgaaggcctgggccacgtcatctgtcgcaataagctcaatgtctgtaggagccctggga 42705238  T
Q  163 atagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgt 262  Q
    ||||| | ||||| | |||||||||||| ||||| || |||||||||||  ||| || |||   ||||| ||||||||||||  |||||| | |||||||    
T  42705239 atagtatggacatgcccgtactgcctaagaacccgctctggcaagtgacggaccttcatgtcgctgccgcccatgatccatccggagtaccaacatatgt 42705338  T
Q  263 cctgaaaggacgtaatgt 280  Q
    ||||||||| ||| ||||    
T  42705339 cctgaaagggcgtgatgt 42705356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 140 - 281
Target Start/End: Complemental strand, 39465486 - 39465347
Alignment:
Q  140 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat 239  Q
    |||||||||||| || |||| ||||||||  ||||||| | |||||||||| ||||  || |||||||| ||  ||| || |||   |||||||||||||    
T  39465486 caatgtctgtagaagccctgagaatagtc--gacatacccatactgcctaagaaccggctctggcaagttacggaccatcctgtcgctgccggccatgat 39465389  T
Q  240 ccatctagagtactagcatatgtcctgaaaggacgtaatgtc 281  Q
    |||||  ||||||||||||||||||||||||| ||| |||||    
T  39465388 ccatccggagtactagcatatgtcctgaaagggcgtgatgtc 39465347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 3681143 - 3681088
Alignment:
Q  4 tagtcaggaatggacgcatggaggttcataataggatgtgatactctacaaaacta 59  Q
    ||||||||||||| |||| || |||||||||||||||||||||||||| |||||||    
T  3681143 tagtcaggaatggtcgcaggggggttcataataggatgtgatactctaaaaaacta 3681088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 25147659 - 25147612
Alignment:
Q  4 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 51  Q
    ||||||||||||| |||| || |||||| |||||||||||||||||||    
T  25147659 tagtcaggaatggccgcaggggggttcacaataggatgtgatactcta 25147612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 32305590 - 32305637
Alignment:
Q  4 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 51  Q
    ||||||||||||| | ||||| |||||| |||||||||||||||||||    
T  32305590 tagtcaggaatggccacatgggggttcacaataggatgtgatactcta 32305637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 39465670 - 39465623
Alignment:
Q  4 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 51  Q
    ||||||||||||| |||| || |||||| |||||||||||||||||||    
T  39465670 tagtcaggaatggccgcaggggggttcacaataggatgtgatactcta 39465623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 280
Target Start/End: Original strand, 32307880 - 32307986
Alignment:
Q  174 atactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgtcctgaaaggac 273  Q
    |||| |||||||||||| ||||| ||  ||||||||||  ||| || |||   || |||||||||||||||  |||||| |||||||||||| ||||| |    
T  32307880 atacccgtactgcctaagaacccgctcaggcaagtgacggaccatcctgtcgctgtcggccatgatccatccggagtaccagcatatgtcctcaaagggc 32307979  T
Q  274 gtaatgt 280  Q
    || ||||    
T  32307980 gtgatgt 32307986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 280
Target Start/End: Complemental strand, 3680918 - 3680825
Alignment:
Q  187 ctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgtcctgaaaggacgtaatgt 280  Q
    |||| ||||| || |||||||||||  ||| ||||||   ||||||||||||||||||  ||||||||| || |||||| ||||| ||| ||||    
T  3680918 ctaagaacccgctctggcaagtgacggaccatcttgtcgctgccggccatgatccatccggagtactagtatgtgtcctcaaagggcgtgatgt 3680825  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 177
Target Start/End: Original strand, 32305774 - 32305811
Alignment:
Q  140 caatgtctgtaggaggcctgggaatagtctagacatac 177  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  32305774 caatgtctgtaggagccctgggaatagtctggacatac 32305811  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 42705035 - 42705079
Alignment:
Q  7 tcaggaatggacgcatggaggttcataataggatgtgatactcta 51  Q
    |||||||||| |||| || |||||| |||||||||||||||||||    
T  42705035 tcaggaatggccgcaggggggttcacaataggatgtgatactcta 42705079  T

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Target: scaffold0251 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 60 - 271
Target Start/End: Original strand, 16977 - 17192
Alignment:
Q  60 gatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggcca--tag-ctacgtcccctgccgtaagaggcccaatgtctgtaggagg 155  Q
    |||||||||||| ||| ||||||||| ||||||||| |||||||| ||||| ||  ||| | | |||  |||||| || | ||  ||||||||||||||     
T  16977 gatcacccctctactgatggctgaggacatgtagagcaaactctgtgaagggcacctaggccatgtcatctgccgcaataagctaaatgtctgtaggagc 17076  T
Q  156 cctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactag 255  Q
    ||| |||||||||| ||||||| |||||| ||||| ||||| || ||| |||||||  ||| || |||   ||| |||||||||||||| ||||||| ||    
T  17077 cctcggaatagtctggacatacccgtactacctaacaacccgctctggaaagtgacggaccatcctgtcgctgctggccatgatccatccagagtaccag 17176  T
Q  256 catatgtcctgaaagg 271  Q
    ||||||||||||||||    
T  17177 catatgtcctgaaagg 17192  T

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Target: scaffold0251; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 16875 - 16922
Alignment:
Q  4 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 51  Q
    ||||||||||||| |||| || |||||| |||||||||||||||||||    
T  16875 tagtcaggaatggccgcaggggggttcacaataggatgtgatactcta 16922  T

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Target: scaffold0408 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 125 - 271
Target Start/End: Complemental strand, 7188 - 7042
Alignment:
Q  125 ctgccgtaagaggcccaatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgta 224  Q
    |||||| |||| || |||||||||||||||||  ||||||||||| |||||||  ||||||||||| || || || |||||||||||  ||| |  |||     
T  7188 ctgccgcaagaagctcaatgtctgtaggaggcaagggaatagtctggacatacctgtactgcctaagaaaccgctctggcaagtgacggaccattatgtc 7089  T
Q  225 tttgccggccatgatccatctagagtactagcatatgtcctgaaagg 271  Q
      || |||||||||||||||| |||||||||| ||||||||||||||    
T  7088 gctgtcggccatgatccatctggagtactagcttatgtcctgaaagg 7042  T

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Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 140 - 280
Target Start/End: Original strand, 6285814 - 6285954
Alignment:
Q  140 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat 239  Q
    |||||||| |||||| |||||||||||||| ||||||| |||||||||||| ||||| || || ||||||||  ||| || | |   |||  ||||||||    
T  6285814 caatgtctataggagccctgggaatagtctggacatacccgtactgcctaagaacccgctctgccaagtgacggaccatcctatcgctgctagccatgat 6285913  T
Q  240 ccatctagagtactagcatatgtcctgaaaggacgtaatgt 280  Q
    |||||| |||||| |||||||||||| ||||| ||| ||||    
T  6285914 ccatctggagtaccagcatatgtcctcaaagggcgtgatgt 6285954  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 127 - 244
Target Start/End: Complemental strand, 35014454 - 35014337
Alignment:
Q  127 gccgtaagaggcccaatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatt 226  Q
    ||||||| | || |||||| |||| ||| |||| ||||||||| ||||||| |||||||||||| ||||| || |||||||||||  ||| || |||  |    
T  35014454 gccgtaataagctcaatgtatgtacgagccctgtgaatagtctggacatacccgtactgcctaagaacccgctctggcaagtgacggaccatcctgtcgt 35014355  T
Q  227 tgccggccatgatccatc 244  Q
    ||||| ||||||||||||    
T  35014354 tgccgaccatgatccatc 35014337  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 269
Target Start/End: Complemental strand, 2029818 - 2029728
Alignment:
Q  179 cgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgtcctgaaa 269  Q
    |||||||||| | ||||| || |||||||||||  ||| |||| | |||||||||||||||||||| ||| ||| |||| | |||||||||    
T  2029818 cgtactgcctcagaacccgctctggcaagtgacgcaccatcttctgtttgccggccatgatccatccagaataccagcacacgtcctgaaa 2029728  T

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Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 211
Target Start/End: Original strand, 257345 - 257416
Alignment:
Q  140 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgac 211  Q
    |||||||||| |||| |||| ||||||||| ||||||| |||||| ||||| ||||| || |||||||||||    
T  257345 caatgtctgtgggagccctgagaatagtctggacatacccgtactacctaagaacccgctctggcaagtgac 257416  T

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Target: scaffold0010 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 269
Target Start/End: Original strand, 32353 - 32451
Alignment:
Q  171 gacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgtcctgaaa 269  Q
    |||||||  ||||| ||||| ||||| || |||||||||||  ||| || ||| | ||  ||||||||||||||| |||||| ||||||||||||||||    
T  32353 gacatacctgtactacctaagaacccgctctggcaagtgacggaccatcatgtctctgttggccatgatccatctggagtaccagcatatgtcctgaaa 32451  T

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