View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11014_low_28 (Length: 296)
Name: NF11014_low_28
Description: NF11014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11014_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 12820280 - 12820013
Alignment:
| Q |
19 |
ataatgtttggagaaatattagttttcatgttgttatttatcttggcattatgtttaatgaaggtgtgtatttgaatggcactgtttactggttttccaa |
118 |
Q |
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| T |
12820280 |
ataatgtttggagaaatattagttttcatgttgttatttatcttggcattatgtttaatgaaggtgtgtatttgaatggcactgtttactggttttccaa |
12820181 |
T |
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| Q |
119 |
tccaaataagagttttaagtatagtgagaaggattttactgttgaacaacttatgattatctcccttgatcttagtaccgagacatacacgcgcttgttg |
218 |
Q |
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| T |
12820180 |
tccgaataagagttttaagtatagtgagaaggattttactgttgaacaacttatgattatctcccttgatcttagtaccgagatatacacgcgcttgctg |
12820081 |
T |
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| Q |
219 |
ccccctcgtgaggttgatgaagtgccagttgttcaacaaagtcttgctgtattaagggaccgcctttg |
286 |
Q |
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| T |
12820080 |
ccccctcgtgaggttgatgaagtgccagttgttcaacaaagtcttgctgtattaagggaccgcctttg |
12820013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 245
Target Start/End: Complemental strand, 19326221 - 19326123
Alignment:
| Q |
147 |
aaggattttactgttgaacaacttatgattatctcccttgatcttagtaccgagacatacacgcgcttgttgccccctcgtgaggttgatgaagtgcca |
245 |
Q |
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| T |
19326221 |
aaggatattaccgtcgagcaatttatgattatctcccttgatcttggtactgagacatacaagcaatttcagacccctcgtggtgttgatgaagtgcca |
19326123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 19344813 - 19344751
Alignment:
| Q |
145 |
agaaggattttactgttgaacaacttatgattatctcccttgatcttagtaccgagacataca |
207 |
Q |
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| T |
19344813 |
agaaggatattactgttgggaaatttgtgattatctcccttgatcttggtaccgagacataca |
19344751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 207
Target Start/End: Original strand, 19374626 - 19374661
Alignment:
| Q |
172 |
tgattatctcccttgatcttagtaccgagacataca |
207 |
Q |
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| T |
19374626 |
tgattatctcccttgatcttggtaccgagacataca |
19374661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 24254662 - 24254602
Alignment:
| Q |
147 |
aaggattttactgttgaacaacttatgattatctcccttgatcttagtaccgagacataca |
207 |
Q |
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| T |
24254662 |
aaggatattaccgttgagcaattcatgattatctcccttgatcttggtactgagacataca |
24254602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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