View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11014_low_30 (Length: 280)

Name: NF11014_low_30
Description: NF11014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11014_low_30
NF11014_low_30
[»] chr2 (4 HSPs)
chr2 (106-271)||(41282855-41283019)
chr2 (117-271)||(41282649-41282803)
chr2 (152-272)||(1233749-1233870)
chr2 (106-167)||(33361052-33361111)
[»] scaffold0178 (2 HSPs)
scaffold0178 (106-268)||(18486-18646)
scaffold0178 (152-273)||(19102-19226)
[»] chr5 (1 HSPs)
chr5 (105-248)||(120077-120218)
[»] chr3 (7 HSPs)
chr3 (105-169)||(8922888-8922950)
chr3 (105-169)||(41325826-41325888)
chr3 (105-169)||(50107572-50107634)
chr3 (114-169)||(1772880-1772933)
chr3 (106-169)||(8923629-8923690)
chr3 (106-169)||(23514488-23514549)
chr3 (106-169)||(34329130-34329191)
[»] chr4 (2 HSPs)
chr4 (106-174)||(5469961-5470027)
chr4 (107-151)||(45620874-45620918)
[»] chr8 (2 HSPs)
chr8 (106-169)||(38443039-38443100)
chr8 (106-150)||(38443618-38443662)
[»] chr7 (1 HSPs)
chr7 (125-169)||(48204975-48205017)
[»] chr1 (1 HSPs)
chr1 (106-169)||(1764521-1764582)


Alignment Details
Target: chr2 (Bit Score: 124; Significance: 8e-64; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 106 - 271
Target Start/End: Complemental strand, 41283019 - 41282855
Alignment:
Q  106 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatgcggaataaattaaacaaagggttggaattaaaacct 205  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||  |||||||||||||||| |||||||||||||||||||||||  ||||||||||    
T  41283019 catctttactccatttaagtttgctcaatttacatcatttaccatc--atggatgtgtgacatgtggaataaattaaacaaagggttgagattaaaacct 41282922  T
Q  206 tagaaaaaacaaacttgttactctcttgtatctgaaacaacacg-ctgcctcctttcttcttcttct 271  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  41282921 tagaaaaaacaaacttgttactctcttgtatctgaaacaacacgcctgccacctttcttcttcttct 41282855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 117 - 271
Target Start/End: Original strand, 41282649 - 41282803
Alignment:
Q  117 catttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatgcggaataaattaaacaaagggttggaattaaaaccttagaaaaaa-c 215  Q
    ||||||| ||||||| |||||||||||||||||||  || ||||||||| ||| |||||||||| |||||||| |||  ||||||| | ||||||||| |    
T  41282649 catttaagtttgctccatttacaccatttaccatc--atagatgtgtgatatgtggaataaattgaacaaaggattgagattaaaaacatagaaaaaaac 41282746  T
Q  216 aaacttgttactctcttgtatctgaaacaacac-gctgcctcctttcttcttcttct 271  Q
    || ||| ||||| ||||||||||||||||||||   |||||||| ||||||||||||    
T  41282747 aatcttattactttcttgtatctgaaacaacacatttgcctcctgtcttcttcttct 41282803  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 152 - 272
Target Start/End: Original strand, 1233749 - 1233870
Alignment:
Q  152 tcatggatgtgtgacatgcggaataaattaaacaaagggttggaattaaaaccttagaaaaaacaaacttgttactctcttgtatctgaaacaacac-gc 250  Q
    |||||||||||||||| | || | |||| ||| ||| ||||   ||||||||||||||||||||||||| |||  ||||||||||| ||| ||||||  |    
T  1233749 tcatggatgtgtgacacgtggcaaaaataaaataaatggttaagattaaaaccttagaaaaaacaaactagttcttctcttgtatccgaagcaacacacc 1233848  T
Q  251 tgcctcctttcttcttcttctc 272  Q
     | |||||||||||||||||||    
T  1233849 agtctcctttcttcttcttctc 1233870  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 167
Target Start/End: Original strand, 33361052 - 33361111
Alignment:
Q  106 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgaca 167  Q
    ||||||| |||||||||  ||||||||||||| ||||||||||   ||||||||||||||||    
T  33361052 catctttgctccatttacctttgctcaatttataccatttacc--ttcatggatgtgtgaca 33361111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 106 - 268
Target Start/End: Original strand, 18486 - 18646
Alignment:
Q  106 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatgcggaataaattaaacaaagggttggaattaaaacct 205  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||| ||  ||||||||||    
T  18486 catctttactccatttaagtttgttcaatttacaccatttaccatc--atggatgtgtgacatgtggaataaattaaacaaagggctgagattaaaacct 18583  T
Q  206 tagaaaaaacaaacttgttactctcttgtatctgaaacaacacgctgcctcctttcttcttct 268  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  18584 tagaaaaaacaaacttgttactctcttgtagctgaaacaacacgccgcctcctttcttcttct 18646  T

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Target: scaffold0178; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 152 - 273
Target Start/End: Complemental strand, 19226 - 19102
Alignment:
Q  152 tcatggatgtgtgacatgcggaataaattaaacaaagggttggaattaaaaccttagaa--aaaacaaacttgttactctcttgtatctgaaacaacacg 249  Q
    |||||||||||||||||| | |||||||||||||||||| ||  ||||||| |||||||  ||||||| ||| |||||||||||||||| |||||| ||     
T  19226 tcatggatgtgtgacatgtgtaataaattaaacaaagggctgagattaaaaacttagaaaaaaaacaatcttattactctcttgtatctaaaacaagaca 19127  T
Q  250 c-tgcctcctttcttcttcttctca 273  Q
    | |||||||| ||||||||||||||    
T  19126 cttgcctcctgtcttcttcttctca 19102  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 248
Target Start/End: Original strand, 120077 - 120218
Alignment:
Q  105 tcatctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatgcggaataaattaaacaaagggttggaattaaaacc 204  Q
    |||||||| |||||||||  ||| |||||||||| ||||||  ||  | || |||| |||||||  |||| |||| ||| ||| |||||  ||||||||     
T  120077 tcatctttgctccatttagctttcctcaatttaccccattt--caagttatagatgcgtgacatatggaaaaaataaaataaatggttgagattaaaact 120174  T
Q  205 ttagaaaaaacaaacttgttactctcttgtatctgaaacaacac 248  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  120175 ttagaaaaaacaaacttgttcctctcttgtatctgaaacaacac 120218  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 8922888 - 8922950
Alignment:
Q  105 tcatctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 169  Q
    ||||||||||||||||||  |||||||||||||| ||||||| ||  ||||||||||||||||||    
T  8922888 tcatctttactccatttaggtttgctcaatttaccccatttatca--tcatggatgtgtgacatg 8922950  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 41325826 - 41325888
Alignment:
Q  105 tcatctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 169  Q
    ||||||||||||||||||  |||||||||||||| ||||||| ||  ||||||||||||||||||    
T  41325826 tcatctttactccatttaggtttgctcaatttaccccatttatca--tcatggatgtgtgacatg 41325888  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 50107572 - 50107634
Alignment:
Q  105 tcatctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 169  Q
    ||||||||||| ||||||  |||||||||||||| ||||||| ||  ||||||||||||||||||    
T  50107572 tcatctttactacatttaggtttgctcaatttaccccatttatca--tcatggatgtgtgacatg 50107634  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 1772880 - 1772933
Alignment:
Q  114 ctccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 169  Q
    |||||||||| |||||||||||||| ||||||||  | |||||||| |||||||||    
T  1772880 ctccatttaagtttgctcaatttaccccatttac--tatcatggatatgtgacatg 1772933  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 8923690 - 8923629
Alignment:
Q  106 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 169  Q
    ||||||| ||||||||   ||||||| |||||| ||||||||||  ||||||||||||||||||    
T  8923690 catctttgctccatttgggtttgctccatttaccccatttacca--tcatggatgtgtgacatg 8923629  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 23514549 - 23514488
Alignment:
Q  106 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 169  Q
    ||||||| ||||||||   |||||||||||||| ||||||||  | ||||||||||||||||||    
T  23514549 catctttgctccatttgcctttgctcaatttaccccatttac--tatcatggatgtgtgacatg 23514488  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 34329191 - 34329130
Alignment:
Q  106 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 169  Q
    ||||||| || ||||||  |||||||||||||| ||||||||  | ||||||||||||||||||    
T  34329191 catctttgcttcatttatttttgctcaatttactccatttac--tatcatggatgtgtgacatg 34329130  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 5470027 - 5469961
Alignment:
Q  106 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatgcggaa 174  Q
    ||||||| |||||||||| |||||||||||||  ||||||||||  | |||||||||||||||| ||||    
T  5470027 catctttgctccatttaagtttgctcaatttatcccatttacca--ttatggatgtgtgacatgtggaa 5469961  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 45620874 - 45620918
Alignment:
Q  107 atctttactccatttaaatttgctcaatttacaccatttaccatc 151  Q
    |||||| ||||||||||||||||||||||||   |||||||||||    
T  45620874 atctttgctccatttaaatttgctcaatttatctcatttaccatc 45620918  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 38443039 - 38443100
Alignment:
Q  106 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 169  Q
    ||||||| |||||||||| | ||||| |||||| ||||||||||  ||||||||||||||||||    
T  38443039 catctttgctccatttaagtctgctccatttaccccatttacca--tcatggatgtgtgacatg 38443100  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 38443662 - 38443618
Alignment:
Q  106 catctttactccatttaaatttgctcaatttacaccatttaccat 150  Q
    ||||||| |||||||||| ||||||| |||||| |||||||||||    
T  38443662 catctttgctccatttaagtttgctccatttaccccatttaccat 38443618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 48205017 - 48204975
Alignment:
Q  125 tttgctcaatttacaccatttaccatctcatggatgtgtgacatg 169  Q
    ||||||| |||||||||||||||||  ||||||||||||||||||    
T  48205017 tttgctccatttacaccatttacca--tcatggatgtgtgacatg 48204975  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 1764521 - 1764582
Alignment:
Q  106 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 169  Q
    ||||||| |||||||||| |||||||||||||| | ||||| ||  |||||||||| |||||||    
T  1764521 catctttgctccatttaagtttgctcaatttaccctatttatca--tcatggatgtatgacatg 1764582  T

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