View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11014_low_34 (Length: 241)
Name: NF11014_low_34
Description: NF11014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11014_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 26 - 227
Target Start/End: Original strand, 4581174 - 4581375
Alignment:
| Q |
26 |
aattgaaacaatattaattggatttgaaaatggcgccagtatcagcattagcaaagtacaaactggtattcttgggtgaccaatctgttggtaaaaccag |
125 |
Q |
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| T |
4581174 |
aattgaaacaatattaattggatttgaaaatggcgccagtatcagcattagcaaagtacaaactggtatttttgggtgaccaatctgttggtaaaaccag |
4581273 |
T |
|
| Q |
126 |
catcatcactcgcttcatgtatgataaatttgataacacctatcaggtacccttctcaaattcaatcaaaaattcactttaaattcttcaatattcattc |
225 |
Q |
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| T |
4581274 |
catcatcactcgcttcatgtacgataaatttgataacacctatcaggtacccttctcagattcaatcaaaaattcactttcaattcttcaatattcattc |
4581373 |
T |
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| Q |
226 |
at |
227 |
Q |
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|| |
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| T |
4581374 |
at |
4581375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 53 - 176
Target Start/End: Complemental strand, 40880871 - 40880748
Alignment:
| Q |
53 |
aaatggcgccagtatcagcattagcaaagtacaaactggtattcttgggtgaccaatctgttggtaaaaccagcatcatcactcgcttcatgtatgataa |
152 |
Q |
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| T |
40880871 |
aaatggcgccagtttcagctctcgcgaagtacaaattggttttcctcggcgatcaatccgtcggtaaaaccagcatcatcactcgctttatgtacgacaa |
40880772 |
T |
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| Q |
153 |
atttgataacacctatcaggtacc |
176 |
Q |
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| T |
40880771 |
attcgataacacttatcaggtacc |
40880748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 82 - 173
Target Start/End: Complemental strand, 39530043 - 39529952
Alignment:
| Q |
82 |
tacaaactggtattcttgggtgaccaatctgttggtaaaaccagcatcatcactcgcttcatgtatgataaatttgataacacctatcaggt |
173 |
Q |
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|||||||| || ||||| ||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||| || | ||||||||||| |
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| T |
39530043 |
tacaaactcgttttcttaggtgatcaatccgttggtaaaactagcatcatcactcgctttatgtatgataaattcgacactacctatcaggt |
39529952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 173
Target Start/End: Complemental strand, 37854224 - 37854157
Alignment:
| Q |
106 |
caatctgttggtaaaaccagcatcatcactcgcttcatgtatgataaatttgataacacctatcaggt |
173 |
Q |
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||||| ||||| |||||||| |||||||| ||||||||||| || |||||||| | |||||||||||| |
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| T |
37854224 |
caatccgttggcaaaaccagtatcatcacccgcttcatgtacgacaaatttgacaccacctatcaggt |
37854157 |
T |
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