View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11014_low_35 (Length: 238)
Name: NF11014_low_35
Description: NF11014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11014_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 29210856 - 29211078
Alignment:
| Q |
1 |
ataaaaatttaatttgaacacaaaaataaatcaccccaaccaagaaatgcaagaatactttttcnnnnnnntgtttacctttataattataattatgtat |
100 |
Q |
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| T |
29210856 |
ataaaaatttaatttgaacacaaaaataaatcaccccaaccaagaaatgcaagaatattttttcaaaaaaatgtttacctttataattataattatgtat |
29210955 |
T |
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| Q |
101 |
tattcattttctcagggacattttacattcctaccaggaccaccatagtaaaagtaatttccccacccattattagtcccttcttgtatattataacaat |
200 |
Q |
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| T |
29210956 |
tattcattttctcagggacattttacattcctaccaggaccaccatagtaaaagtaatttccccacccattattagtcccttcttgtatattataacaat |
29211055 |
T |
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| Q |
201 |
ttggacggttagctacaacattg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
29211056 |
ttggacggttagctacaacattg |
29211078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 204
Target Start/End: Complemental strand, 29228317 - 29228225
Alignment:
| Q |
112 |
tcagggacattttacattcctaccaggaccaccatagtaaaagtaatttccccacccattattagtcccttcttgtatattataacaatttgg |
204 |
Q |
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|||||||||||| ||||||| ||||| |||||||||||||| ||||||||||| || || | |||| |||||||||||||||||||||| |
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| T |
29228317 |
tcagggacatttggcattccttccaggtccaccatagtaaaaataatttccccagttatcatcaatccccccttgtatattataacaatttgg |
29228225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 165
Target Start/End: Complemental strand, 29255701 - 29255650
Alignment:
| Q |
114 |
agggacattttacattcctaccaggaccaccatagtaaaagtaatttcccca |
165 |
Q |
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| T |
29255701 |
agggacatttcatattccttccaggtccaccatagtaaaagtgatttcccca |
29255650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 204
Target Start/End: Complemental strand, 29236211 - 29236133
Alignment:
| Q |
126 |
cattcctaccaggaccaccatagtaaaagtaatttccccacccattattagtcccttcttgtatattataacaatttgg |
204 |
Q |
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||||||| ||||| |||| |||| ||||||| |||||||| | ||| || ||||| ||| |||||||||||||||||| |
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| T |
29236211 |
cattcctgccaggtccactatagaaaaagtattttccccagtctttactactccctccttttatattataacaatttgg |
29236133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 204
Target Start/End: Complemental strand, 29280944 - 29280866
Alignment:
| Q |
126 |
cattcctaccaggaccaccatagtaaaagtaatttccccacccattattagtcccttcttgtatattataacaatttgg |
204 |
Q |
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||||||| ||||| |||| |||| ||||||| |||||||| | ||| || ||||| ||| |||||||||||||||||| |
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| T |
29280944 |
cattcctgccaggtccactatagaaaaagtattttccccagtctttactactccctccttttatattataacaatttgg |
29280866 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 205
Target Start/End: Original strand, 14494462 - 14494553
Alignment:
| Q |
114 |
agggacattttacattcctaccaggaccaccatagtaaaagtaatttccccacccattattagtcccttcttgtatattataacaatttgga |
205 |
Q |
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|||||||||| ||||| || || || |||||||||||||||||||| ||||| ||||||| | ||| ||||||||| ||| ||||||||| |
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| T |
14494462 |
agggacatttcacatttcttcctggtccaccatagtaaaagtaattcccccaaacattatttattcctccttgtatatcatagcaatttgga |
14494553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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