View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11014_low_6 (Length: 685)

Name: NF11014_low_6
Description: NF11014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11014_low_6
NF11014_low_6
[»] chr2 (5 HSPs)
chr2 (18-685)||(3219751-3220414)
chr2 (180-557)||(15985303-15985677)
chr2 (561-677)||(12504720-12504836)
chr2 (561-677)||(14681090-14681206)
chr2 (96-155)||(15985680-15985738)
[»] scaffold0014 (2 HSPs)
scaffold0014 (561-685)||(143719-143843)
scaffold0014 (561-677)||(173513-173629)
[»] chr8 (4 HSPs)
chr8 (561-677)||(44197897-44198013)
chr8 (561-677)||(23929138-23929254)
chr8 (566-677)||(20793444-20793555)
chr8 (252-558)||(23729106-23729406)
[»] chr7 (4 HSPs)
chr7 (561-677)||(48513605-48513721)
chr7 (561-685)||(48728039-48728163)
chr7 (561-685)||(3718391-3718514)
chr7 (594-685)||(42105178-42105269)
[»] chr6 (1 HSPs)
chr6 (561-677)||(29651774-29651890)
[»] chr5 (4 HSPs)
chr5 (561-677)||(36662526-36662642)
chr5 (561-677)||(36679136-36679252)
chr5 (561-685)||(23203976-23204100)
chr5 (612-685)||(43560199-43560271)
[»] chr3 (3 HSPs)
chr3 (561-677)||(38327864-38327980)
chr3 (561-685)||(55488644-55488768)
chr3 (561-685)||(46073352-46073476)
[»] chr1 (3 HSPs)
chr1 (561-677)||(52609183-52609299)
chr1 (566-685)||(52887707-52887826)
chr1 (566-685)||(29886958-29887077)
[»] scaffold1284 (1 HSPs)
scaffold1284 (612-685)||(143-215)


Alignment Details
Target: chr2 (Bit Score: 642; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 18 - 685
Target Start/End: Original strand, 3219751 - 3220414
Alignment:
Q  18 gaagtttagagtagcactactgatagtggtcagatagcgctgcagtaaagctcatgtaaaaaattctaaactttttgcaatatcatcatttccccccact 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  3219751 gaagtttagagtagcactactgatagtggtcagatagcgctgcagtaaagctcatgtaaaa--ttctaaactttttgcaatatcatcatttccccccact 3219848  T
Q  118 tgcggctttccaatggctctttctgcaacctttccagggggactttctacaacttccagactgccatcctcaccttgcggctttccagcggccctttctg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3219849 tgcggctttccaatggctctttctgcaacctttccagggggactttctacaacttccagactgccatcctcaccttgcggctttccagcggccctttctg 3219948  T
Q  218 caacaaaattatatccgtgcatcagagctatttagtcaaggatattaagcagcgacacccttttcatgttgttttccttgtatcgactacctataaaata 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3219949 caacaaaattatatccgtgcatcagagctatttagtcaaggatattaagcagcgacacccttttcatgttgttttccttgtatcgactacctataaaata 3220048  T
Q  318 ttcatcgattcgtgatcagattttgggttctcctattttatccactttcaactttgcatggtatatcttgtgtgtactggaaaaaccgtaagatgtagat 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220049 ttcatcgattcgtgatcagattttgggttctcctattttatccactttcaactttgcatggtatatcttgtgtgtactggaaaaaccgtaagatgtagat 3220148  T
Q  418 gtgcatcatatcatgaacctgataactcctctgctttggtctttttaagtagtaatcaaggtcgatccctcaaataagcaagtcctgtcctaagtgagac 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220149 gtgcatcatatcatgaacctgataactcctctgctttggtctttttaagtagtaatcaaggtcgatccctcaaataagcaagtcctgtcctaagtgagac 3220248  T
Q  518 tattgccagctcagtcagtcacagtattgacaagtgatttgttaaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatgg 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220249 tattgccagctcagtcagtcacagtattgacaagtgatttgttaaaagct--aaacgagtagtttatgttaagcttgatgatatgaactaccttcaatgg 3220346  T
Q  618 aagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattcc 685  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3220347 aagcaacaagtcgaaggtgttcttcgcgaaacaaaaacggtgaaatttgtgatttcacctcagattcc 3220414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 180 - 557
Target Start/End: Complemental strand, 15985677 - 15985303
Alignment:
Q  180 gccatcctcaccttgcggctttccagcggccctttctgcaacaaaattatatccgtgcatcagagctatttagtcaaggatattaagcagcgacaccctt 279  Q
    ||||||||||||||| ||||||||||| ||||||||| |||||||||  |||||||||||||||||||||||||||| |||||| ||||||| | |||||    
T  15985677 gccatcctcaccttgtggctttccagcagccctttctacaacaaaatgctatccgtgcatcagagctatttagtcaaagatattgagcagcggcgccctt 15985578  T
Q  280 ttcatgttgttttccttgtatcgactacctataaaatattcatcgattcgtgatcagattttgggttctcctattttatccactttcaactttgcatggt 379  Q
      ||||||||||||||||||| ||||||||||||||||||||||||||| ||||| || ||| |||||||| |||| | |||||||||||||||||||||    
T  15985577 cgcatgttgttttccttgtatggactacctataaaatattcatcgattcatgatcggagtttaggttctccaatttgacccactttcaactttgcatggt 15985478  T
Q  380 atatcttgtgtgtactggaaaaaccgtaagatgtagatgtgcatcatatcatgaacctgataactcctctgctttggtctttttaagtagtaatc-aagg 478  Q
     |||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||| ||||  || || ||||||||||| ||||    
T  15985477 ctatcttgtgtgtactggaaaaaccatcagatgtagatgtgcatcatatcatgcacctgataactcctctgatttgaactcttgaagtagtaatcaaagg 15985378  T
Q  479 tcgatccctcaaataagcaagtcctgtcctaagtgagactattgccagctcagtcagtcacagtattgacaagtgattt 557  Q
    | ||||||||||||||||||||| ||||||||||| ||| |||||||||    |||| |||||||||||||||||||||    
T  15985377 ttgatccctcaaataagcaagtcttgtcctaagtgtgacgattgccagc----tcagccacagtattgacaagtgattt 15985303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 561 - 677
Target Start/End: Original strand, 12504720 - 12504836
Alignment:
Q  561 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 660  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  12504720 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 12504819  T
Q  661 aatttgtgatttcacct 677  Q
    |||||||||||||||||    
T  12504820 aatttgtgatttcacct 12504836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 561 - 677
Target Start/End: Complemental strand, 14681206 - 14681090
Alignment:
Q  561 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 660  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  14681206 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 14681107  T
Q  661 aatttgtgatttcacct 677  Q
    |||||||||||||||||    
T  14681106 aatttgtgatttcacct 14681090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 15985738 - 15985680
Alignment:
Q  96 aatatcatcatttccccccacttgcggctttccaatggctctttctgcaacctttccagg 155  Q
    ||||||||| ||||||||  |||||||||||||| |||| |||||||||||||||| |||    
T  15985738 aatatcatcgtttccccct-cttgcggctttccattggccctttctgcaacctttcaagg 15985680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 93; Significance: 6e-45; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 561 - 685
Target Start/End: Original strand, 143719 - 143843
Alignment:
Q  561 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 660  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  143719 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 143818  T
Q  661 aatttgtgatttcacctcagattcc 685  Q
    ||||||||||||||||| |||||||    
T  143819 aatttgtgatttcacctgagattcc 143843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 561 - 677
Target Start/End: Original strand, 173513 - 173629
Alignment:
Q  561 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 660  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  173513 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 173612  T
Q  661 aatttgtgatttcacct 677  Q
    |||||||||||||||||    
T  173613 aatttgtgatttcacct 173629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 2e-42; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 561 - 677
Target Start/End: Original strand, 44197897 - 44198013
Alignment:
Q  561 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 660  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  44197897 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 44197996  T
Q  661 aatttgtgatttcacct 677  Q
    |||||||||||||||||    
T  44197997 aatttgtgatttcacct 44198013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 561 - 677
Target Start/End: Complemental strand, 23929254 - 23929138
Alignment:
Q  561 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 660  Q
    |||| |||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||| | |||||    
T  23929254 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagttgaaggtgttcttcgcggaacgaagatggtga 23929155  T
Q  661 aatttgtgatttcacct 677  Q
    |||||||||||||||||    
T  23929154 aatttgtgatttcacct 23929138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 566 - 677
Target Start/End: Original strand, 20793444 - 20793555
Alignment:
Q  566 cttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaattt 665  Q
    |||||||| |||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||    
T  20793444 cttcaaacaagtagtttctgttaagcttgatgatacaaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtgaaattt 20793543  T
Q  666 gtgatttcacct 677  Q
    ||||||||||||    
T  20793544 gtgatttcacct 20793555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 252 - 558
Target Start/End: Original strand, 23729106 - 23729406
Alignment:
Q  252 gtcaaggatattaagcagcgacacccttttcatgttgttttccttgtatcgactacctataaaatattcatcgattcgtgatcagattttgggttctcct 351  Q
    |||||||| ||| |||||| |  ||||||||||||||||| |||||| | |  |||||| ||| || |||| ||||||||||||||||| |||||||||     
T  23729106 gtcaaggaaattgagcagcaatgcccttttcatgttgtttgccttgtgtgggttacctacaaagtactcattgattcgtgatcagatttagggttctccc 23729205  T
Q  352 attttatccactttcaactttgcatgg-tatatcttgt-gtgtactg-gaaaaaccgtaagatgtagatgtgcatcatatcatgaacctgataactcctc 448  Q
    | |  | |||||||| ||||||||||| | ||| |||| |||   |  ||||||||    ||||||||||||     ||||||| ||||| | ||||||     
T  23729206 actacacccactttccactttgcatgggtctatattgtagtgcgatcagaaaaaccacctgatgtagatgtg-----tatcatgcacctggtgactccta 23729300  T
Q  449 tgctttggtctttttaagtagtaatcaaggtcgatccctcaaataagcaagtcctgtcctaagtgagactattgccagctcagtcagtcacagtattgac 548  Q
    ||| ||||||| ||  ||| |||| ||| || |||| ||||||||||||||| |||||||||||| ||||||||||||||| | |   ||||||||||||    
T  23729301 tgccttggtctcttacagtggtaaccaatgttgatctctcaaataagcaagttctgtcctaagtgtgactattgccagctc-gac---cacagtattgac 23729396  T
Q  549 aagtgatttg 558  Q
    ||||||||||    
T  23729397 aagtgatttg 23729406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 2e-42; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 561 - 677
Target Start/End: Complemental strand, 48513721 - 48513605
Alignment:
Q  561 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 660  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  48513721 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 48513622  T
Q  661 aatttgtgatttcacct 677  Q
    |||||||||||||||||    
T  48513621 aatttgtgatttcacct 48513605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 561 - 685
Target Start/End: Complemental strand, 48728163 - 48728039
Alignment:
Q  561 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 660  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| | |||||    
T  48728163 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaaacaacaagtcgaaggtgttcttcgcggaacgaagatggtga 48728064  T
Q  661 aatttgtgatttcacctcagattcc 685  Q
    ||||||||||||||||| |||||||    
T  48728063 aatttgtgatttcacctgagattcc 48728039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 561 - 685
Target Start/End: Complemental strand, 3718514 - 3718391
Alignment:
Q  561 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 660  Q
    |||| |||||||| | |||||| ||| |||||||||||||  ||||||||| ||||||||||||||||||||||||||| ||||| |||||| | |||||    
T  3718514 aaaaccttcaaacaactagtttctgtcaagcttgatgatacaaactacctttaatggaagcaacaagtcgaaggtgttc-tcgcggaacgaagatggtga 3718416  T
Q  661 aatttgtgatttcacctcagattcc 685  Q
    ||||||||||||||||| |||||||    
T  3718415 aatttgtgatttcacctgagattcc 3718391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 594 - 685
Target Start/End: Original strand, 42105178 - 42105269
Alignment:
Q  594 gatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattcc 685  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||| | |||||| | |||||||||||||||||||||| |||||||    
T  42105178 gatgatacgaactaccttcaatggaagcaacaagttgaaggtgttcttcgtggaacgaagatggtgaaatttgtgatttcacctgagattcc 42105269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 561 - 677
Target Start/End: Original strand, 29651774 - 29651890
Alignment:
Q  561 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 660  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  29651774 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 29651873  T
Q  661 aatttgtgatttcacct 677  Q
    |||||||||||||||||    
T  29651874 aatttgtgatttcacct 29651890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 2e-42; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 561 - 677
Target Start/End: Original strand, 36662526 - 36662642
Alignment:
Q  561 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 660  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  36662526 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 36662625  T
Q  661 aatttgtgatttcacct 677  Q
    |||||||||||||||||    
T  36662626 aatttgtgatttcacct 36662642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 561 - 677
Target Start/End: Complemental strand, 36679252 - 36679136
Alignment:
Q  561 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 660  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  36679252 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 36679153  T
Q  661 aatttgtgatttcacct 677  Q
    |||||||||||||||||    
T  36679152 aatttgtgatttcacct 36679136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 561 - 685
Target Start/End: Complemental strand, 23204100 - 23203976
Alignment:
Q  561 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 660  Q
    |||| |||||||| |||| ||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  23204100 aaaaccttcaaacaagtactttctgttaagcttgattatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 23204001  T
Q  661 aatttgtgatttcacctcagattcc 685  Q
    ||||||||||||||||| |||||||    
T  23204000 aatttgtgatttcacctgagattcc 23203976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 612 - 685
Target Start/End: Original strand, 43560199 - 43560271
Alignment:
Q  612 caatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattcc 685  Q
    ||||||||||||||| |||||||||||||||||| |||||| | ||||||||||| |||||||||| |||||||    
T  43560199 caatggaagcaacaa-tcgaaggtgttcttcgcggaacgaagatggtgaaatttgcgatttcacctgagattcc 43560271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 2e-42; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 561 - 677
Target Start/End: Complemental strand, 38327980 - 38327864
Alignment:
Q  561 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 660  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  38327980 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 38327881  T
Q  661 aatttgtgatttcacct 677  Q
    |||||||||||||||||    
T  38327880 aatttgtgatttcacct 38327864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 561 - 685
Target Start/End: Original strand, 55488644 - 55488768
Alignment:
Q  561 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 660  Q
    |||| |||||||| |||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  55488644 aaaaccttcaaacaagtagtttctattaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 55488743  T
Q  661 aatttgtgatttcacctcagattcc 685  Q
    ||||||||||||||||| |||||||    
T  55488744 aatttgtgatttcacctgagattcc 55488768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 561 - 685
Target Start/End: Original strand, 46073352 - 46073476
Alignment:
Q  561 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 660  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| | | |||    
T  46073352 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaaacaacaagtcgaaggtgttcttcgcggaacgaagatgttga 46073451  T
Q  661 aatttgtgatttcacctcagattcc 685  Q
    ||||||||||||||||| |||||||    
T  46073452 aatttgtgatttcacctgagattcc 46073476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 2e-42; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 561 - 677
Target Start/End: Complemental strand, 52609299 - 52609183
Alignment:
Q  561 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 660  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  52609299 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 52609200  T
Q  661 aatttgtgatttcacct 677  Q
    |||||||||||||||||    
T  52609199 aatttgtgatttcacct 52609183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 566 - 685
Target Start/End: Original strand, 52887707 - 52887826
Alignment:
Q  566 cttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaattt 665  Q
    |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||| | ||||||||||    
T  52887707 cttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaatgaagatggtgaaattt 52887806  T
Q  666 gtgatttcacctcagattcc 685  Q
    |||||||||||| |||||||    
T  52887807 gtgatttcacctgagattcc 52887826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 566 - 685
Target Start/End: Original strand, 29886958 - 29887077
Alignment:
Q  566 cttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaattt 665  Q
    |||||||| |||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| | ||||||||||    
T  29886958 cttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaaacaacaagtcgaaggtgttcttcgcggaacgaagatggtgaaattt 29887057  T
Q  666 gtgatttcacctcagattcc 685  Q
    |||||||| ||| |||||||    
T  29887058 gtgatttcgcctgagattcc 29887077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1284 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold1284
Description:

Target: scaffold1284; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 612 - 685
Target Start/End: Original strand, 143 - 215
Alignment:
Q  612 caatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattcc 685  Q
    ||||||||||||||| |||||||||||||||||| |||||| | ||||||||||| |||||||||| |||||||    
T  143 caatggaagcaacaa-tcgaaggtgttcttcgcggaacgaagatggtgaaatttgcgatttcacctgagattcc 215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University