View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11014_low_8 (Length: 599)
Name: NF11014_low_8
Description: NF11014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11014_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 52 - 583
Target Start/End: Original strand, 30666464 - 30666995
Alignment:
| Q |
52 |
agaactcacttgattcccatcttagcaaagacaagctcagcttggaaagattttccctgtccttttcctccccagactccaagaatgagtggaacctata |
151 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30666464 |
agaactcacttgattcccatcttagcaaagacaagctcagcttggaaagattttccctgtccttttcctccccagactccaagaatgagtggaacctata |
30666563 |
T |
|
| Q |
152 |
aaaacaaaaatgaaaatattgaatatgtatctcaattctgctaaagtcatagcatagtttatagaggaatcatgtgtcaaatttacataccttgatgttt |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30666564 |
aaaacaaaaatgaaaatattgaatatgtatctcaattctgctaaagtcatagcatagtttatagaggaatcatgtgtcaaatttacataccttgatgttt |
30666663 |
T |
|
| Q |
252 |
ggtagggtcaagaaattcttggtgatgtgaacaacaagcttgtccataaaagcaggagcaatgtaaaatccatccatagtgttgtcaaagttgtacctaa |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30666664 |
ggtagggtcaagaaattcttggtgatgtgaacaacaagcttgtccataaaagcaggagcaatgtaaaatccatccatagtgttgtcaaagttgtacctaa |
30666763 |
T |
|
| Q |
352 |
aacaccatcatcacaagttagatcaaaagaaacttcatttacaaaccatagtaataaaatcatgagcaaattacgagtatttggttttgaattaacaaat |
451 |
Q |
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| T |
30666764 |
aacaccatcatcacaggttagatcaaaagaaacttcatttacaaaccatagtaataaaatcatgagcaaattacgagtatttggttttgaattaacaaaa |
30666863 |
T |
|
| Q |
452 |
tgcgtagcaagtcactcactgtttaagtccagtactaaggtactcataagaactcatgactgcataatgagttccagtatcttgtggtgcttggaaaact |
551 |
Q |
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| T |
30666864 |
tgcgtagcaagtcactcactgtttaagtccagtactaaggtactcataagaactcatgactgcataatgagttccagtatcttgtggtgcttggaaaact |
30666963 |
T |
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| Q |
552 |
gaatcaaccataccctttcctcttgtgatgtc |
583 |
Q |
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| T |
30666964 |
gaatcaaccataccctttcctcttgtgatgtc |
30666995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 2e-47; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 463 - 583
Target Start/End: Original strand, 34436947 - 34437067
Alignment:
| Q |
463 |
tcactcactgtttaagtccagtactaaggtactcataagaactcatgactgcataatgagttccagtatcttgtggtgcttggaaaactgaatcaaccat |
562 |
Q |
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| T |
34436947 |
tcacttactgtctaagtccagtactaatgtactcataagaactcatgactgcataatgagttccagaatcttgtggtgcttggaaaactgtatcaaccat |
34437046 |
T |
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| Q |
563 |
accctttcctcttgtgatgtc |
583 |
Q |
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| T |
34437047 |
acccttccctcttgtgatgtc |
34437067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 234 - 362
Target Start/End: Original strand, 34436457 - 34436585
Alignment:
| Q |
234 |
ttacataccttgatgtttggtagggtcaagaaattcttggtgatgtgaacaacaagcttgtccataaaagcaggagcaatgtaaaatccatccatagtgt |
333 |
Q |
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|||||||||||||| || || || |||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| |||| |
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| T |
34436457 |
ttacataccttgatattaggcagagtcaagaagttcttagtgatgtgtacaacaagcttgtccataaaagcaggtgcaatgtaaaaaccatccatggtgt |
34436556 |
T |
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| Q |
334 |
tgtcaaagttgtacctaaaacaccatcat |
362 |
Q |
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| T |
34436557 |
tgtcaaggttgtacctgaaataccatcat |
34436585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 34436146 - 34436240
Alignment:
| Q |
54 |
aactcacttgattcccatcttagcaaagacaagctcagcttggaaagattttccctgtccttttcctccccagactccaagaatgagtggaacct |
148 |
Q |
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|||| ||||||| |||||||| |||||||||||||||||||||||||||||||| || ||||| |||||||||| ||||||||||| ||||||| |
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| T |
34436146 |
aacttacttgatgcccatcttggcaaagacaagctcagcttggaaagattttccttgacctttacctccccagataccaagaatgagaggaacct |
34436240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 313
Target Start/End: Original strand, 6854143 - 6854189
Alignment:
| Q |
267 |
ttcttggtgatgtgaacaacaagcttgtccataaaagcaggagcaat |
313 |
Q |
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||||| ||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
6854143 |
ttcttagtgatgtgaacaacaagcttgtccataaatgcaggtgcaat |
6854189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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