View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11015_high_2 (Length: 382)
Name: NF11015_high_2
Description: NF11015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11015_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 211 - 353
Target Start/End: Complemental strand, 49018995 - 49018853
Alignment:
| Q |
211 |
tggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagccaaacctctactttgtaccatcctccaattaattggttttga |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
49018995 |
tggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagccaaacctctactttgtaccatcctccaattaattggttctga |
49018896 |
T |
|
| Q |
311 |
tcaccaacacaactcacaaacagttccaaaatcactcatgcat |
353 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
49018895 |
tcaccaacacaacacacaaacagttccaaaatcactcatgcat |
49018853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 49019202 - 49019059
Alignment:
| Q |
1 |
aattcaataaataattccaacccagatataaaatttaaacttcagaaaaatcaagtaaaaaggccacatacctgacattctctattttcactaatcaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49019202 |
aattcaataaataattccaacccagatgtaaaac--aaacttcagaaaaatcaagtaaaaaggccacatacctgacattctctattttcactaatcaatt |
49019105 |
T |
|
| Q |
101 |
caccagaagttgaattcgatgaaatccctacatcaattttcctgga |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49019104 |
caccagaagttgaattcgatgaaatccctacatcaattttcctgga |
49019059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 4e-60; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 211 - 344
Target Start/End: Complemental strand, 8345097 - 8344964
Alignment:
| Q |
211 |
tggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagccaaacctctactttgtaccatcctccaattaattggttttga |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8345097 |
tggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagtcaaacctctactttgtaccatcctccaattaattggttctgg |
8344998 |
T |
|
| Q |
311 |
tcaccaacacaactcacaaacagttccaaaatca |
344 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
8344997 |
tcaccaacacaacacacaaacagttccaaaatca |
8344964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 211 - 344
Target Start/End: Original strand, 42824544 - 42824677
Alignment:
| Q |
211 |
tggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagccaaacctctactttgtaccatcctccaattaattggttttga |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
42824544 |
tggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagtcaaacctctactttgtaccatcctccaattaattggttctgg |
42824643 |
T |
|
| Q |
311 |
tcaccaacacaactcacaaacagttccaaaatca |
344 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
42824644 |
tcaccaacacaacacacaaacagttccaaaatca |
42824677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 8345306 - 8345161
Alignment:
| Q |
1 |
aattcaataaataattccaacccagatataaaatttaaacttcagaaaaatcaagtaaaaaggccacatacctgacattctctattttcactaatcaatt |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
8345306 |
aattcaataaataattccaaaccagatataaaatttaaacttcagaaaaattaattaaaaaggccacatacctgacattctatattttcaccaatcaatt |
8345207 |
T |
|
| Q |
101 |
caccagaagttgaattcgatgaaatccctacatcaattttcctgga |
146 |
Q |
| |
|
|| ||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
8345206 |
catcagaagttgaattggacgaaatccctacatcaattttcctgga |
8345161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 42824308 - 42824453
Alignment:
| Q |
1 |
aattcaataaataattccaacccagatataaaatttaaacttcagaaaaatcaagtaaaaaggccacatacctgacattctctattttcactaatcaatt |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
42824308 |
aattcaataaataattccaaaccagatataaaatttaaacttcagaaaaattaattaaaaaggccacatacctgacattctatattttcaccaatcaatt |
42824407 |
T |
|
| Q |
101 |
caccagaagttgaattcgatgaaatccctacatcaattttcctgga |
146 |
Q |
| |
|
|| ||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
42824408 |
catcagaagttgaattggacgaaatccctacatcaattttcctgga |
42824453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 50861337 - 50861266
Alignment:
| Q |
70 |
acctgacattctctattttcactaatcaattcaccagaagttgaattcgatgaaatccctacatcaattttc |
141 |
Q |
| |
|
||||| |||||||||||| ||| |||||||||||||| |||||||||||| |||||||| |||||||||||| |
|
|
| T |
50861337 |
acctggcattctctatttccaccaatcaattcaccagtagttgaattcgacgaaatcccaacatcaattttc |
50861266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 144
Target Start/End: Original strand, 39073745 - 39073819
Alignment:
| Q |
70 |
acctgacattctctattttcactaatcaattcaccagaagttgaattcgatgaaatccctacatcaattttcctg |
144 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||| |||| ||||| || |||||| ||||||||||||||| |
|
|
| T |
39073745 |
acctgacattctctatttccatcaatcaattcaccaaaagtcgaatttgacaaaatccaaacatcaattttcctg |
39073819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 144
Target Start/End: Original strand, 36588096 - 36588170
Alignment:
| Q |
70 |
acctgacattctctattttcactaatcaattcaccagaagttgaattcgatgaaatccctacatcaattttcctg |
144 |
Q |
| |
|
|||||||| ||||||| | | | |||||||||||||||||| ||||| || |||||||| | ||||||||||||| |
|
|
| T |
36588096 |
acctgacaatctctatatccgccaatcaattcaccagaagtcgaatttgacgaaatcccaagatcaattttcctg |
36588170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University