View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11015_high_5 (Length: 305)
Name: NF11015_high_5
Description: NF11015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11015_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 33049774 - 33049978
Alignment:
| Q |
1 |
agaagaaacatggaaatgcaatgtttctcattcactagtgtgtgaatagtgatatttttgagaagattatgcgttgtgaaaatgcgaaagaaacttgaga |
100 |
Q |
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| T |
33049774 |
agaagaaacatggaaatgcaatgtttctcattcactagtgtgtgaatagtgatatttttgagaagattatgcgttgtgaaaatgcgaaagaaacttgaga |
33049873 |
T |
|
| Q |
101 |
tacacttgagagattgtattatggatatgaaaaattgaagaaagtgaggcttcaagcattaagaaaacaatacgagatgctgaatatggaggaaggtgaa |
200 |
Q |
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| T |
33049874 |
tacacttgagagattgtattatggatataaaaaattgaagaaagtgaggcttcaagcattaagaaaacaatacgagatg-tgaatatggaggatggtgaa |
33049972 |
T |
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| Q |
201 |
tatgtg |
206 |
Q |
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|||||| |
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| T |
33049973 |
tatgtg |
33049978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 28452510 - 28452357
Alignment:
| Q |
19 |
caatgtttctcattcactagtgtgtgaatagtgatatttttgagaagattatgcgttgtgaaaatgcgaaagaaacttgagatacacttgagagattgta |
118 |
Q |
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| T |
28452510 |
caatgtttctcattcactatggtgttaatgatgagattttggagaagatcatgcactgtgaaaatgcgaaggaaacttgagatactattaagaggttgta |
28452411 |
T |
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| Q |
119 |
ttatggatatgaaaaattgaagaaagtgaggcttcaagcattaagaaaacaata |
172 |
Q |
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| T |
28452410 |
ttctggagatggaaagttgaagaaggtgggacttcaagcattaaggagacaata |
28452357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 253
Target Start/End: Complemental strand, 45496521 - 45496403
Alignment:
| Q |
135 |
ttgaagaaagtgaggcttcaagcattaagaaaacaatacgagatgctgaatatggaggaaggtgaatatgtgagtcaatactttgataaactggtgaatc |
234 |
Q |
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|||||||| ||||| |||||||| || |||| ||| || || || ||| ||||| |||| |||||||| ||||||||||||||||| || | |||| |
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| T |
45496521 |
ttgaagaaggtgagacttcaagctttgagaagacagtatgaagtgttgacaatggaagaagaagaatatgttagtcaatactttgataaggtgatcaatc |
45496422 |
T |
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| Q |
235 |
tagcaaatcagatgataag |
253 |
Q |
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| T |
45496421 |
taacaaatcagatgataag |
45496403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 253
Target Start/End: Complemental strand, 45504263 - 45504145
Alignment:
| Q |
135 |
ttgaagaaagtgaggcttcaagcattaagaaaacaatacgagatgctgaatatggaggaaggtgaatatgtgagtcaatactttgataaactggtgaatc |
234 |
Q |
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|||||||| ||||| |||||||| || |||| ||| || || || ||| ||||| |||| |||||||| ||||||||||||||||| || | |||| |
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| T |
45504263 |
ttgaagaaggtgagacttcaagctttgagaagacagtatgaagtgttgacaatggaagaagaagaatatgttagtcaatactttgataaggtgatcaatc |
45504164 |
T |
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| Q |
235 |
tagcaaatcagatgataag |
253 |
Q |
| |
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|| |||||||||||||||| |
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|
| T |
45504163 |
taacaaatcagatgataag |
45504145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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