View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11016_high_1 (Length: 664)
Name: NF11016_high_1
Description: NF11016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11016_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 9 - 594
Target Start/End: Original strand, 33122486 - 33123085
Alignment:
| Q |
9 |
gaggagcagagacttagttgggtcaaatacattgtggaaaatccaaagtagccaggttagcagaagatgctttggggatggtaatcagttgattatagtg |
108 |
Q |
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| T |
33122486 |
gaggagcaaagacttagttgggtcagatacattgtggaaaatccaaagtagccaggatggcagaagatactctggggatggtaatcagttgattatagtg |
33122585 |
T |
|
| Q |
109 |
gattaagtcatcgacaatacttaaaataaaatgtctccgtaatgaaaacacgatatccaaagactaaattcaaaatgatattttaacataactaaaatca |
208 |
Q |
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| T |
33122586 |
gattaagtcatcgacaatacaaaaaataaaatgtctatgtaatggaaagacggtatgtaaagactaaatctaaaatgatattttaacataactaaaatca |
33122685 |
T |
|
| Q |
209 |
gaacgctttgatatttacatgaatctttgcatattcaagcatagattatatcagtcc----aaaga---aattttttaacaactctataaagaccacctg |
301 |
Q |
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| T |
33122686 |
gaacgc-ttgatatttacatgaatctttgcatattcaagcatagataatatcagtccttcaaaagaaagaaatttttaacaactctataaagaccacctg |
33122784 |
T |
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| Q |
302 |
ccacgatccctcgaaaa---gaatatggcagcccaagtatgaggttaatcatagagttattacgcttcttgttaactcagtactaatacatgctccaaag |
398 |
Q |
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||||||||||| |||| | |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||| |
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| T |
33122785 |
ccacgatccctgaaaaatagggatatggcagcccaagtctgaggttaatcatagagttattatgcttcttgttaactcggtactaatatatgctccaaag |
33122884 |
T |
|
| Q |
399 |
tatgtactc-----nnnnnnnnntacatgctctaaagtatctaggattgacatggtttagccattgttatctatatttgttttatttgtctgtaatagtc |
493 |
Q |
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||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33122885 |
tatttactcaaaaaaaaaaaaaatacatgctctaaagtatctaggattgacatgatttagccattgttatctttatttgttttatttgtctgtaatagtc |
33122984 |
T |
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| Q |
494 |
tattaattaattttcaatacacctaatgtgaaacttttgttacttttgtttctaaatatatttatttaattgccttagtttgtaactttttgattaattt |
593 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33122985 |
tattaattaattttcaatacacctaatgtgaaacttttgttacttttgtttctaaatatatttatttaattgccttagtttgtaactttttgattaattt |
33123084 |
T |
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