View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11016_high_10 (Length: 484)

Name: NF11016_high_10
Description: NF11016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11016_high_10
NF11016_high_10
[»] chr6 (31 HSPs)
chr6 (20-474)||(33387507-33387961)
chr6 (189-461)||(33303844-33304116)
chr6 (177-416)||(33644916-33645156)
chr6 (309-455)||(33261971-33262117)
chr6 (315-474)||(33409319-33409478)
chr6 (193-430)||(33271219-33271456)
chr6 (177-431)||(33284987-33285241)
chr6 (305-474)||(33398407-33398576)
chr6 (315-458)||(28870677-28870819)
chr6 (174-451)||(9166122-9166396)
chr6 (307-433)||(33396806-33396932)
chr6 (307-433)||(33407756-33407882)
chr6 (307-450)||(33281091-33281234)
chr6 (171-246)||(33358496-33358571)
chr6 (20-111)||(33644741-33644832)
chr6 (20-104)||(33304207-33304291)
chr6 (26-100)||(33285321-33285395)
chr6 (313-456)||(33056931-33057071)
chr6 (48-103)||(9166485-9166540)
chr6 (315-456)||(33358284-33358424)
chr6 (20-96)||(33262357-33262433)
chr6 (210-364)||(31563224-31563378)
chr6 (20-96)||(28870370-28870446)
chr6 (202-255)||(33057135-33057188)
chr6 (48-104)||(33358656-33358712)
chr6 (53-104)||(31563058-31563109)
chr6 (48-111)||(33057294-33057357)
chr6 (203-258)||(33409535-33409590)
chr6 (388-450)||(31563382-31563444)
chr6 (193-258)||(33398653-33398718)
chr6 (203-255)||(28870565-28870617)
[»] chr2 (3 HSPs)
chr2 (175-474)||(17441257-17441556)
chr2 (339-433)||(17446954-17447048)
chr2 (67-120)||(17441110-17441163)
[»] scaffold0428 (4 HSPs)
scaffold0428 (307-455)||(5744-5892)
scaffold0428 (307-450)||(13018-13161)
scaffold0428 (20-104)||(6113-6197)
scaffold0428 (211-255)||(5950-5994)
[»] scaffold1408 (3 HSPs)
scaffold1408 (307-452)||(1-146)
scaffold1408 (20-104)||(367-451)
scaffold1408 (211-255)||(204-248)
[»] chr4 (6 HSPs)
chr4 (19-120)||(31499255-31499356)
chr4 (51-104)||(31472782-31472835)
chr4 (318-400)||(31479558-31479640)
chr4 (51-104)||(31479240-31479293)
chr4 (313-374)||(31485293-31485354)
chr4 (52-117)||(31504420-31504485)


Alignment Details
Target: chr6 (Bit Score: 439; Significance: 0; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 20 - 474
Target Start/End: Complemental strand, 33387961 - 33387507
Alignment:
Q  20 gggtgattcaatactaatagacaaattgcctattatgcatgacaataacaataatatcattggctttctatgttgtgcagtatttacaatggaacctcat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33387961 gggtgattcaatactaatagacaaattgcctattatgcatgacaataacaataatatcattggctttctatgttgtgcagtatttacaatggaacctcat 33387862  T
Q  120 ccagagtgcttttcatgggccaatatgaaactgagtttcaatcatcctatcaaaatgagtgttccagtcattctcaatggaggtcttgttacgaccaaat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33387861 ccagagtgcttttcatgggccaatatgaaactgagtttcaatcatcctatcaaaatgagtgttccagtcattctcaatggaggtcttgttacgaccaaat 33387762  T
Q  220 caagtcacctatggataatctacttcccacgagagtcctcggatgaatttggaaatatctgttttgacatttttaaggggcaggctttgggtatggaggt 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33387761 caagtcacctatggataatctacttcccacgagagtcctcggatgaatttggaaatatctgttttgacatttttaaggggcaagctttgggtatggaggt 33387662  T
Q  320 gaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaattccttggatccgaagtgtaagatt 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33387661 gaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaattccttggctccgaagtgtaagatt 33387562  T
Q  420 ttggcaattgaagatgggacacaaccacaaccacaacaagaatcattcatctcac 474  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  33387561 ttggcaattgaagatgggacacaactacaaccacaacaagaatcattcatgtcac 33387507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 189 - 461
Target Start/End: Complemental strand, 33304116 - 33303844
Alignment:
Q  189 attctcaatggaggtcttgttacgaccaaatcaagtcacctatggataatctacttcccacgagagtcctcggatgaatttggaaatatctgttttgaca 288  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    |||||||| ||| |||  |||| | |    
T  33304116 attctcaatggaggtcttgttatgaccaaatcaagtcacctatggataatctacttcccccgagagtcctatagtgaatttgaaaaaatccattttaata 33304017  T
Q  289 tttttaaggggcaggctttgggtatggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatca 388  Q
    ||||| ||||  | | |||  || ||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||| ||||||| |||||    
T  33304016 tttttgagggtgaagattttagtttggaggtgaagagttgcgggtatcggtgggtatgtaaagaagacctgcaagaattcaacttaacaatgatgaatca 33303917  T
Q  389 cgaaaattccttggatccgaagtgtaagattttggcaattgaagatgggacacaaccacaaccacaacaagaa 461  Q
     ||||||| ||||| |  |||||| |||| ||||||||||||||||| |||||||||| ||||  ||||||||    
T  33303916 agaaaatttcttggctgggaagtgcaagaatttggcaattgaagatgagacacaaccagaaccggaacaagaa 33303844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 177 - 416
Target Start/End: Original strand, 33644916 - 33645156
Alignment:
Q  177 agtgttccagtcattctcaatggaggtcttgttacgaccaaatcaagtcacctatggataatctacttcccacgagagtcctcggatgaatttggaaata 276  Q
    ||||||||||| |||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||   ||||||||||||  |    
T  33644916 agtgttccagtaattctcgatggtggtcttattacgaccaaatcaagtcacctatggataatctacttccctcgagattcctataatgaatttggaagaa 33645015  T
Q  277 tctgttttgacatttttaaggggcaggctttgggtatggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaacttacc 376  Q
    ||| ||||||||||||| || || | | | |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||| |    
T  33645016 tctattttgacatttttgagagggaaggtctgggtatgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaacttaac 33645115  T
Q  377 aatgataaatcacgaaaat-tccttggatccgaagtgtaag 416  Q
    |||||| |||||| ||||| ||||| | |||||||||||||    
T  33645116 aatgatgaatcacaaaaatatccttagctccgaagtgtaag 33645156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 309 - 455
Target Start/End: Complemental strand, 33262117 - 33261971
Alignment:
Q  309 ggtatggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaattccttggatccga 408  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||| ||||| ||||| ||||||| | |||    
T  33262117 ggtatggaggtgaagagttgcgggtatcattgggtatgtaaacaagacctacaagagttcaacttaacaatgatgaatcatgaaaaatccttggcttcga 33262018  T
Q  409 agtgtaagattttggcaattgaagatgggacacaaccacaaccacaa 455  Q
    | ||||||||||||||||||||||||| |||||||||||||||||||    
T  33262017 aatgtaagattttggcaattgaagatgagacacaaccacaaccacaa 33261971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 315 - 474
Target Start/End: Complemental strand, 33409478 - 33409319
Alignment:
Q  315 gaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaattccttggatccgaagtgta 414  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||  ||||||| ||||| ||||||||||||| || ||||||||    
T  33409478 gaggtgaaaagttgcgggtatcgttgggtatgtaaacaagacctacaaaagttcaacttcacaatgatgaatcatgaaaattccttggctcagaagtgta 33409379  T
Q  415 agattttggcaattgaagatgggacacaaccacaaccacaacaagaatcattcatctcac 474  Q
    ||||| ||||||||||||  | |||||||||||||||| |||||||||||||||||||||    
T  33409378 agattatggcaattgaaggcgagacacaaccacaaccagaacaagaatcattcatctcac 33409319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 193 - 430
Target Start/End: Complemental strand, 33271456 - 33271219
Alignment:
Q  193 tcaatggaggtcttgttacgaccaaatcaagtcacctatggataatctacttcccacgagagtcctcggatgaatttggaaatatctgttttgac-attt 291  Q
    |||| ||| ||||| |||||||||||||||||||||||||||| |||| | |||| |||| |||||  ||| |||||| ||| ||||||| | || || |    
T  33271456 tcaaaggaagtcttattacgaccaaatcaagtcacctatggatgatcttcctccctcgagggtcctatgataaatttgaaaacatctgttgttacgatgt 33271357  T
Q  292 ttaaggggcaggctttgggtatggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacga 391  Q
     |  || | |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||  || ||||| | ||||||||    
T  33271356 gttgggtgaaggctt-gggtatggaggtgaagagttgcgggtatcgttggatatgtaaacaagacctacaagagttcaatataacaatgctgaatcacga 33271258  T
Q  392 aaattccttggatccgaagtgtaagattttggcaattga 430  Q
    ||||||||||| ||| || ||||||||||||||||||||    
T  33271257 aaattccttggctccaaaatgtaagattttggcaattga 33271219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 177 - 431
Target Start/End: Complemental strand, 33285241 - 33284987
Alignment:
Q  177 agtgttccagtcattctcaatggaggtcttgttacgaccaaatcaagtcacctatggataatctacttcccacgagagtcctcggatgaatttggaaata 276  Q
    ||||||||||| ||||| ||  ||  |||| ||||||||||||||||||| ||||||||||||||| || |  |||||||||  ||| |||||| ||| |    
T  33285241 agtgttccagtaattcttaagagatatcttattacgaccaaatcaagtcatctatggataatctacctctctagagagtcctatgataaatttgaaaaaa 33285142  T
Q  277 tctgttttgacatttttaaggggcaggctttgggtatggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaacttacc 376  Q
    || ||| | ||||| ||  |||  | | |||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||| ||| |    
T  33285141 tcagttgttacattgttgggggtgaagatttgggtatggaggtgaacagttgtggatatcgttgggtatgtaaacaagacctacaagagttcaatttaac 33285042  T
Q  377 aatgataaatcacgaaaattccttggatccgaagtgtaagattttggcaattgaa 431  Q
    |||||| |||||| |||  ||||||| |||||||||||||||| |||||||||||    
T  33285041 aatgatgaatcacaaaatatccttggctccgaagtgtaagattatggcaattgaa 33284987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 305 - 474
Target Start/End: Complemental strand, 33398576 - 33398407
Alignment:
Q  305 tttgggtatggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaattccttggat 404  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||| | | || |||||  ||||||| ||||| ||||||||||| | |    
T  33398576 tttgggttttgaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacgaaagttgaacttcacaatgatgaatcatgaaaattcctttgct 33398477  T
Q  405 ccgaagtgtaagattttggcaattgaagatgggacacaaccacaaccacaacaagaatcattcatctcac 474  Q
    |  |||||||||||| ||||||||||||  | |||||||||||||||| |||||||||||||||||||||    
T  33398476 caaaagtgtaagattatggcaattgaaggcgagacacaaccacaaccagaacaagaatcattcatctcac 33398407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 315 - 458
Target Start/End: Original strand, 28870677 - 28870819
Alignment:
Q  315 gaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaattccttggatccgaagtgta 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| || ||| |||||||||||| || |||||  |    
T  28870677 gaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagagttcaacttaacaatgatgaa-cacaaaaattccttggctcagaagttca 28870775  T
Q  415 agattttggcaattgaagatgggacacaaccacaaccacaacaa 458  Q
    ||||||||| ||||||||||||||||||||| ||||| ||||||    
T  28870776 agattttggaaattgaagatgggacacaaccgcaacctcaacaa 28870819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 174 - 451
Target Start/End: Complemental strand, 9166396 - 9166122
Alignment:
Q  174 atgagtgttccagtcattctcaatggaggtcttgttacgaccaaatcaagtcacctatggataatctacttcccacgagagtcctcggatgaatttggaa 273  Q
    ||||| |||| ||| ||||| ||||||  |||||||  ||||||||| ||||||||||||||||||||| |||| ||||||||||  |||||||||||||    
T  9166396 atgagggttcaagtaattctgaatggatttcttgttttgaccaaatccagtcacctatggataatctacctcccccgagagtcctacgatgaatttggaa 9166297  T
Q  274 atatctgttttgacatttttaaggggcaggctttgggtatggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaactt 373  Q
    | |||  |||||||||| ||  |||  | | ||||| |||| ||||||||| ||| || || ||||||||||||||||||||||||||||| ||||||||    
T  9166296 aaatccattttgacattattcggggtgaaggtttggatatgaaggtgaagacttgtggataccgttgggtatgtaaacaagacctacaagagttcaactt 9166197  T
Q  374 accaatgataaatcacgaaaattccttggatccgaagtgtaagattttggcaattgaagatgggacacaaccacaacc 451  Q
       || ||| ||||||||||| || |||| || || ||| |||| |||||||||| | |||| || ||| ||||||||    
T  9166196 ---aacgatgaatcacgaaaaatcattggctcggacgtgcaagactttggcaatttaggatgagagacagccacaacc 9166122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 307 - 433
Target Start/End: Complemental strand, 33396932 - 33396806
Alignment:
Q  307 tgggtatggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaattccttggatcc 406  Q
    ||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||| | ||||||||| ||||||| ||||| ||||||||||||| ||     
T  33396932 tgggtatggaggtgaagagctgcaggtatagttgggtatgtaaacaagacctacaaaagttcaacttaacaatgatgaatcatgaaaattccttggttca 33396833  T
Q  407 gaagtgtaagattttggcaattgaaga 433  Q
    |||||| |||||||||| |||||||||    
T  33396832 gaagtgcaagattttggaaattgaaga 33396806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 307 - 433
Target Start/End: Complemental strand, 33407882 - 33407756
Alignment:
Q  307 tgggtatggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaattccttggatcc 406  Q
    |||||| | |||||||||| ||||||||| |||||||||||||||||||||||||| | ||||||||| ||||||| ||||||||||||||||||| ||     
T  33407882 tgggtacgaaggtgaagagctgcgggtatagttgggtatgtaaacaagacctacaaaagttcaacttaacaatgatgaatcacgaaaattccttggctca 33407783  T
Q  407 gaagtgtaagattttggcaattgaaga 433  Q
    |||||| |||||||||| |||||||||    
T  33407782 gaagtgcaagattttggaaattgaaga 33407756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 307 - 450
Target Start/End: Complemental strand, 33281234 - 33281091
Alignment:
Q  307 tgggtatggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaattccttggatcc 406  Q
    |||||| ||||||||||||||||| | |||||||  |||||||||||||||||||||| ||||  ||| |||| || ||||| |||  |||||||| ||     
T  33281234 tgggtacggaggtgaagagttgcgtgcatcgttgaatatgtaaacaagacctacaagagttcagtttaacaataatgaatcatgaagcttccttggctca 33281135  T
Q  407 gaagtgtaagattttggcaattgaagatgggacacaaccacaac 450  Q
    |||||| |||||||||| ||||||||||||||||||||| ||||    
T  33281134 gaagtgcaagattttggaaattgaagatgggacacaaccgcaac 33281091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 171 - 246
Target Start/End: Complemental strand, 33358571 - 33358496
Alignment:
Q  171 aaaatgagtgttccagtcattctcaatggaggtcttgttacgaccaaatcaagtcacctatggataatctacttcc 246  Q
    ||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||    
T  33358571 aaaatgagtgttccagtaattctcaatggaggtcttattacgcccaaatcaagtcacctgtggataatctacttcc 33358496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 33644741 - 33644832
Alignment:
Q  20 gggtgattcaatactaatagacaaattgcctattatgcatgacaataacaataatatcattggctttctatgttgtgcagtatttacaatgg 111  Q
    |||| ||||||||| ||||||| |||  ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||    
T  33644741 gggttattcaatacaaatagacgaatctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatgg 33644832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 33304291 - 33304207
Alignment:
Q  20 gggtgattcaatactaatagacaaattgcctattatgcatgacaataacaataatatcattggctttctatgttgtgcagtattt 104  Q
    |||||||||||||| |||||||  ||  |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  33304291 gggtgattcaatacaaatagaccgatctcctattatgcatgacaataacaattatatcattggctttctatgttgtgcggtattt 33304207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 33285395 - 33285321
Alignment:
Q  26 ttcaatactaatagacaaattgcctattatgcatgacaataacaataatatcattggctttctatgttgtgcagt 100  Q
    |||||||| |||||||| ||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  33285395 ttcaataccaatagacagatctcctattatgcatgacaataacaataatatcattggctttgtatgttgtgcagt 33285321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 313 - 456
Target Start/End: Complemental strand, 33057071 - 33056931
Alignment:
Q  313 tggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaattccttggatccgaagtg 412  Q
    |||||||  |||||||||| |||||||||||||||||||||||  ||||||||||||| ||   ||| || |||||| ||||||||||   ||| |||||    
T  33057071 tggaggtcgagagttgcggttatcgttgggtatgtaaacaagatatacaagaattcaattt---aatcatgaatcacaaaaattccttaactccaaagtg 33056975  T
Q  413 taagattttggcaattgaagatgggacacaaccacaaccacaac 456  Q
     || |||||| |||||||||||| |||||||||| |||| ||||    
T  33056974 caaaattttgacaattgaagatgagacacaaccagaaccgcaac 33056931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 48 - 103
Target Start/End: Complemental strand, 9166540 - 9166485
Alignment:
Q  48 cctattatgcatgacaataacaataatatcattggctttctatgttgtgcagtatt 103  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9166540 cctattatgcatgacaataacaataatatcattggctttgtatgttgtgcagtatt 9166485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 315 - 456
Target Start/End: Complemental strand, 33358424 - 33358284
Alignment:
Q  315 gaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaattccttggatccgaagtgta 414  Q
    |||||||||||||| | |||||||||||| | |||||||||||||||||| ||||||||  ||||||| ||||||||||||  |||   |  ||| || |    
T  33358424 gaggtgaagagttgtgagtatcgttgggttt-taaacaagacctacaagagttcaacttcacaatgatgaatcacgaaaatctcttaactgggaaatgca 33358326  T
Q  415 agattttggcaattgaagatgggacacaaccacaaccacaac 456  Q
    ||||||||||||||||||||  ||| ||||| ||||| ||||    
T  33358325 agattttggcaattgaagattagacgcaaccgcaaccgcaac 33358284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 33262433 - 33262357
Alignment:
Q  20 gggtgattcaatactaatagacaaattgcctattatgcatgacaataacaataatatcattggctttctatgttgtg 96  Q
    |||||||||||||| | ||||| ||   |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33262433 gggtgattcaataccagtagaccaaactcctattatgcatgataataacaataatatcattggctttctatgttgtg 33262357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 210 - 364
Target Start/End: Original strand, 31563224 - 31563378
Alignment:
Q  210 acgaccaaatcaagtcacctatggataatctacttcccacgagagtcctcggatgaatttggaaatatctgttttgacatttttaaggggcaggctttgg 309  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||     |||||||| |||| |||  |||||||||||||  ||   |   ||       
T  31563224 acgaccaaatcaagtcacctatggataatctacttccctcgagggtcacgtcatgaatttcgaaaaatccattttgacattttttcggctaaaatttcac 31563323  T
Q  310 gtatggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaaga 364  Q
     ||||  ||||||||||||||| |||||||||||||||||||| |||||||||||    
T  31563324 ctatgagggtgaagagttgcggatatcgttgggtatgtaaacatgacctacaaga 31563378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 28870370 - 28870446
Alignment:
Q  20 gggtgattcaatactaatagacaaattgcctattatgcatgacaataacaataatatcattggctttctatgttgtg 96  Q
    ||||| |||||||| ||||||| |||  ||||||||  ||||||||||||||||||||||||||||| |||||||||    
T  28870370 gggtggttcaatacaaatagacgaatctcctattataaatgacaataacaataatatcattggctttgtatgttgtg 28870446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 33057188 - 33057135
Alignment:
Q  202 gtcttgttacgaccaaatcaagtcacctatggataatctacttcccacgagagt 255  Q
    |||||||||||||||||||||||||||||||||| |||||||| || |||||||    
T  33057188 gtcttgttacgaccaaatcaagtcacctatggattatctacttaccccgagagt 33057135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 33358712 - 33358656
Alignment:
Q  48 cctattatgcatgacaataacaataatatcattggctttctatgttgtgcagtattt 104  Q
    ||||||| ||||||||||||||||||| ||||||| ||| |||||||||||||||||    
T  33358712 cctattaggcatgacaataacaataatgtcattggttttgtatgttgtgcagtattt 33358656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 31563058 - 31563109
Alignment:
Q  53 tatgcatgacaataacaataatatcattggctttctatgttgtgcagtattt 104  Q
    |||||||||||||| |||| |||||||||||||| |||||||||||||||||    
T  31563058 tatgcatgacaatatcaatgatatcattggctttgtatgttgtgcagtattt 31563109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 33057357 - 33057294
Alignment:
Q  48 cctattatgcatgacaataacaataatatcattggctttctatgttgtgcagtatttacaatgg 111  Q
    ||||||| |||||||||| ||||||||||||||||  || |||||||||||| |||||| ||||    
T  33057357 cctattaggcatgacaatgacaataatatcattggtattgtatgttgtgcagcatttacgatgg 33057294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 258
Target Start/End: Complemental strand, 33409590 - 33409535
Alignment:
Q  203 tcttgttacgaccaaatcaagtcacctatggataatctacttcccacgagagtcct 258  Q
    |||| |||| ||||||||||||||||||||| || |||||||||| ||||||||||    
T  33409590 tcttattacaaccaaatcaagtcacctatggctagtctacttcccccgagagtcct 33409535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 450
Target Start/End: Original strand, 31563382 - 31563444
Alignment:
Q  388 acgaaaattccttggatccgaagtgtaagattttggcaattgaagatgggacacaaccacaac 450  Q
    ||| ||| ||||||| || |||||| |||| ||||||||||||||||| ||||||||||||||    
T  31563382 acggaaaatccttggctcggaagtgaaagaatttggcaattgaagatgagacacaaccacaac 31563444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 193 - 258
Target Start/End: Complemental strand, 33398718 - 33398653
Alignment:
Q  193 tcaatggaggtcttgttacgaccaaatcaagtcacctatggataatctacttcccacgagagtcct 258  Q
    ||||| ||| ||||||||||||| ||||||||||||||||||||  |||| |||| ||||| ||||    
T  33398718 tcaatagagatcttgttacgaccgaatcaagtcacctatggatagcctacatcccccgagattcct 33398653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 28870565 - 28870617
Alignment:
Q  203 tcttgttacgaccaaatcaagtcacctatggataatctacttcccacgagagt 255  Q
    |||| |||||||||||||||||||||||||  || |||||||||| |||||||    
T  28870565 tcttattacgaccaaatcaagtcacctatgactagtctacttcccccgagagt 28870617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 144; Significance: 2e-75; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 175 - 474
Target Start/End: Original strand, 17441257 - 17441556
Alignment:
Q  175 tgagtgttccagtcattctcaatggaggtcttgttacga------ccaaatcaagtcacctatggataatctacttcccacgagagtcctcggatgaatt 268  Q
    |||||||||| || |||||||||||| ||||||||||||      |||||||||||||| ||||||||||||||||||   | |||||||   ||| |||    
T  17441257 tgagtgttccggtaattctcaatggaagtcttgttacgataacaaccaaatcaagtcacatatggataatctacttccactgtgagtcctatcatgcatt 17441356  T
Q  269 tggaaatatctgttttgacatttttaaggggcaggctttgggtatggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattc 368  Q
    | || | ||| ||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  17441357 tcgagaaatccgttttgaaatttttgaggggcaagctttgggtatggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagagttc 17441456  T
Q  369 aacttaccaatgataaatcacgaaaattccttggatccgaagtgtaagattttggcaattgaagatgggacacaaccacaaccacaacaagaatcattca 468  Q
    |||||| ||||||| |||||||||||  |||||| || |||||| |||||||||||||||||||||| ||      |||||||| |||||||||||||||    
T  17441457 aacttaacaatgatgaatcacgaaaaaaccttggctcagaagtgcaagattttggcaattgaagatgaga------cacaaccagaacaagaatcattca 17441550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 339 - 433
Target Start/End: Original strand, 17446954 - 17447048
Alignment:
Q  339 tgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaattccttggatccgaagtgtaagattttggcaattgaaga 433  Q
    |||||||||||||||||||||||||| ||||||||| ||||| | ||| ||||||||||||||| || |||||| |||||||| | |||||||||    
T  17446954 tgggtatgtaaacaagacctacaagagttcaacttaacaatgttgaataacgaaaattccttggctcagaagtgcaagatttttgaaattgaaga 17447048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 17441110 - 17441163
Alignment:
Q  67 acaataatatcattggctttctatgttgtgcagtatttacaatggaacctcatc 120  Q
    |||||||||||||||| ||| ||||||||||||||||| | |||| ||||||||    
T  17441110 acaataatatcattggttttgtatgttgtgcagtattttccatggcacctcatc 17441163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 97; Significance: 2e-47; HSPs: 4)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 307 - 455
Target Start/End: Complemental strand, 5892 - 5744
Alignment:
Q  307 tgggtatggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaattccttggatcc 406  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||| || ||||||| ||||||||| ||||||| ||||| ||||| ||||||| | |    
T  5892 tgggtatggatgtgaagtgttgcgggtatcgttgggtatgtaaacaaaacttacaagagttcaacttaacaatgatgaatcatgaaaaatccttggcttc 5793  T
Q  407 gaagtgtaagattttggcaattgaagatgggacacaaccacaaccacaa 455  Q
    ||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  5792 gaaatgtaagattttggcaattgaagatgagacacaaccacaaccacaa 5744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 307 - 450
Target Start/End: Original strand, 13018 - 13161
Alignment:
Q  307 tgggtatggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaattccttggatcc 406  Q
    |||||| ||||||||||||||||| | |||||||  |||||||||||||||||||||| ||||  ||| |||| || ||||| |||  |||||||| ||     
T  13018 tgggtacggaggtgaagagttgcgtgcatcgttgaatatgtaaacaagacctacaagagttcagtttaacaataatgaatcatgaagcttccttggctca 13117  T
Q  407 gaagtgtaagattttggcaattgaagatgggacacaaccacaac 450  Q
    |||||| |||||||||| ||||||||||||||||||||| ||||    
T  13118 gaagtgcaagattttggaaattgaagatgggacacaaccgcaac 13161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 6197 - 6113
Alignment:
Q  20 gggtgattcaatactaatagacaaattgcctattatgcatgacaataacaataatatcattggctttctatgttgtgcagtattt 104  Q
    ||||| |||||||||||||||| |||  ||| |||| ||||||||||| |||||||||||||||||| ||| |||||||||||||    
T  6197 gggtggttcaatactaatagacgaatctcctgttatacatgacaataagaataatatcattggctttgtattttgtgcagtattt 6113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 5994 - 5950
Alignment:
Q  211 cgaccaaatcaagtcacctatggataatctacttcccacgagagt 255  Q
    ||||||||||||||||||||||| || ||||||| || |||||||    
T  5994 cgaccaaatcaagtcacctatggctagtctactttccccgagagt 5950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 307 - 452
Target Start/End: Complemental strand, 146 - 1
Alignment:
Q  307 tgggtatggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaattccttggatcc 406  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||| || ||||||| ||||||||| ||||||| ||||| ||||| ||||||| | |    
T  146 tgggtatggatgtgaagtgttgcgggtatcgttgggtatgtaaacaaaacttacaagagttcaacttaacaatgatgaatcatgaaaaatccttggcttc 47  T
Q  407 gaagtgtaagattttggcaattgaagatgggacacaaccacaacca 452  Q
    ||| ||||||||||||||||||||||||| ||||||||||||||||    
T  46 gaaatgtaagattttggcaattgaagatgagacacaaccacaacca 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 451 - 367
Alignment:
Q  20 gggtgattcaatactaatagacaaattgcctattatgcatgacaataacaataatatcattggctttctatgttgtgcagtattt 104  Q
    ||||| |||||||||||||||| |||  ||| |||| ||||||||||| |||||||||||||||||| ||| |||||||||||||    
T  451 gggtggttcaatactaatagacgaatctcctgttatacatgacaataagaataatatcattggctttgtattttgtgcagtattt 367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 248 - 204
Alignment:
Q  211 cgaccaaatcaagtcacctatggataatctacttcccacgagagt 255  Q
    ||||||||||||||||||||||| || ||||||| || |||||||    
T  248 cgaccaaatcaagtcacctatggctagtctactttccccgagagt 204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 31499255 - 31499356
Alignment:
Q  19 agggtgattcaatactaatagacaaattgcctattatgcatgacaataacaataatatcattggctttctatgttgtgcagtatttacaatggaacctca 118  Q
    ||||||||||||||| |||||||  ||  || ||||| |||||||||||||||||||||||||||||| ||||||||||||||||| | |||| ||||||    
T  31499255 agggtgattcaatacgaatagactcatctcccattatccatgacaataacaataatatcattggctttgtatgttgtgcagtattttctatggcacctca 31499354  T
Q  119 tc 120  Q
    ||    
T  31499355 tc 31499356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 31472782 - 31472835
Alignment:
Q  51 attatgcatgacaataacaataatatcattggctttctatgttgtgcagtattt 104  Q
    |||||||||||||||||||||||||||||||| | | ||||||||| |||||||    
T  31472782 attatgcatgacaataacaataatatcattggttgtatatgttgtgtagtattt 31472835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 400
Target Start/End: Original strand, 31479558 - 31479640
Alignment:
Q  318 gtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaattcctt 400  Q
    ||||||| ||| ||||| |||||||| | |||||| || |||||||||||||||||| ||| ||| ||||||  |||||||||    
T  31479558 gtgaagaattgtgggtaccgttgggtttataaacaggatctacaagaattcaacttaacaaagatgaatcacagaaattcctt 31479640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 31479240 - 31479293
Alignment:
Q  51 attatgcatgacaataacaataatatcattggctttctatgttgtgcagtattt 104  Q
    |||||||| |||||||||||||||||| |||||| | ||||||||| |||||||    
T  31479240 attatgcacgacaataacaataatatcgttggctgtgtatgttgtgtagtattt 31479293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 31485293 - 31485354
Alignment:
Q  313 tggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaactta 374  Q
    |||| |||||||||||||||||||||||||||| ||| || || || ||||| |||||||||    
T  31485293 tggaagtgaagagttgcgggtatcgttgggtatttaagcaggatctgcaagagttcaactta 31485354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 31504420 - 31504485
Alignment:
Q  52 ttatgcatgacaataacaataatatcattggctttctatgttgtgcagtatttacaatggaacctc 117  Q
    |||||||||||  ||| |||||||||||||| | | ||||||||| ||||||| | ||||||||||    
T  31504420 ttatgcatgactttaaaaataatatcattggttgtgtatgttgtgtagtattttccatggaacctc 31504485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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