View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11016_high_16 (Length: 424)
Name: NF11016_high_16
Description: NF11016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11016_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 413
Target Start/End: Complemental strand, 28153550 - 28153156
Alignment:
| Q |
19 |
ggcttgcaacatctaattctgtaatccatattggcaaacgagaagcagtaagggtatcaatggaagctctcatgtaaggaaagttgagagggagagaaga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28153550 |
ggcttgcaacatctaattctgtaatccatattggcaaacgagaagcagtaagggtatcaatggaagctctcatgtaaggaaagttgagagggagagaaga |
28153451 |
T |
|
| Q |
119 |
gaaatgagactccagaccaattccaagcggcaattgcctattcacactttgaatttgtttgattttctgtatgtaatttgatggagatgataaaccatct |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28153450 |
gaaatgagactccagaccaattccaagcggcaattgcctattcacactttgaatttgtttgattttctggatgtaatttgatggagatgataaaccatct |
28153351 |
T |
|
| Q |
219 |
ctactatcctcaattgtgttaaactcattaataaataaggtggtttgtggatcaatattatgaacctggttaaatgctttggctgaaaaatcttgtccaa |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28153350 |
ctactatcctcaattgtgttaaactcattaataaataaggtcgtttgtggatcaatattatgaaccttgttaaatgctttggctgaaaaatcttgtccaa |
28153251 |
T |
|
| Q |
319 |
gtttaccttcaaagaatgagaaatggagattttcattaacaacatcccaaccaataacttggcctttgtatcttcccacaacggaattcattctt |
413 |
Q |
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| T |
28153250 |
gtttaccttcaaagaatgagaaatggagattttcattaacaacatcccaaccaataacttggcccttgtatcttcccacaacggaattcattctt |
28153156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 30 - 408
Target Start/End: Original strand, 8023142 - 8023520
Alignment:
| Q |
30 |
tctaattctgtaatccatattggcaaacgagaagcagtaagggtatcaatggaagctctcatgtaaggaaagttgagagggagagaagagaaatgagact |
129 |
Q |
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||||||||||| |||||||||||||||| || || ||||||||||| |||||||||||||||||| ||||| |||| | || ||||||||||| |
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| T |
8023142 |
tctaattctgtgatccatattggcaaaccagtggcgcgaagggtatcaagggaagctctcatgtaaggcaagttaggaggactattagggaaatgagact |
8023241 |
T |
|
| Q |
130 |
ccagaccaattccaagcggcaattgcctattcacactttgaatttgtttgattttctgtatgtaatttgatggagatgataaaccatctctactatcctc |
229 |
Q |
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| || ||||||||||| |||||||| ||||||||||||||||| | |||||| |||| || || ||| || | |||||||||||||| ||||||||| |
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| T |
8023242 |
caagtccaattccaagaggcaattgactattcacactttgaatctctttgatcttctcgatatacgttggcggggttgataaaccatctcgactatcctc |
8023341 |
T |
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| Q |
230 |
aattgtgttaaactcattaataaataaggtggtttgtggatcaatattatgaacctggttaaatgctttggctgaaaaatcttgtccaagtttaccttca |
329 |
Q |
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| T |
8023342 |
aatggtattatattcattcatgaacaaagtagtttgcccgtcaatgttgtgaacctcattaaacatcctagctgaaaagttttgtcccaatttactttcg |
8023441 |
T |
|
| Q |
330 |
aagaatgagaaatggagattttcattaacaacatcccaaccaataacttggcctttgtatcttcccacaacggaattca |
408 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||| || || ||||||||| ||||| |||||||| |
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| T |
8023442 |
aagaatgagaaatgtaggttttcattaacaacatcccaaccaataagctgacccttgtatcttgacacaatggaattca |
8023520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 406
Target Start/End: Original strand, 21543427 - 21543814
Alignment:
| Q |
19 |
ggcttgcaacatctaattctgtaatccatattggcaaacgagaagcagtaagggtatcaatggaagctctcatgtaaggaaagttgagagggagagaaga |
118 |
Q |
| |
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||||||||||||||||||| || |||||||||||||||| || |||| |||| |||||| ||| |||||||||||||| ||||| |||| | | || |
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| T |
21543427 |
ggcttgcaacatctaattcagtgatccatattggcaaaccagtggcagcaaggatatcaagggaggctctcatgtaaggcaagttaggaggaaaattagg |
21543526 |
T |
|
| Q |
119 |
gaaatgagactccagaccaattccaagcggcaattgcctattcacactttgaatttgtttgattttctgtatgtaatttgatggagatgataaaccatct |
218 |
Q |
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||||||||||| || ||||||||||| ||||||||| ||||| |||||| || | | | || ||||| || || |||| || | ||||||||||||| |
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| T |
21543527 |
aaaatgagactcgagtccaattccaagaggcaattgcttattccaactttggatctctcttatcttctggatatattttggcggggttgataaaccatct |
21543626 |
T |
|
| Q |
219 |
ctactatcctcaattgtgttaaactcattaataaataaggtggtttgtggatcaatattatgaacctggttaaatgctttggctgaaaaatcttgtccaa |
318 |
Q |
| |
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|||||||||||||| || ||| | ||||| || || || ||||| | | ||||| || ||||| | ||||| | | || ||||| |||||| | |
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| T |
21543627 |
ctactatcctcaatagtattataatcattcatgaacaaagtggtgtttccatcaacgttgtgaacttcattaaacatcctcgatgtaaaattttgtccta |
21543726 |
T |
|
| Q |
319 |
gtttaccttcaaagaatgagaaatggagattttcattaacaacatcccaaccaataacttggcctttgtatcttcccacaacggaatt |
406 |
Q |
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|||||| ||||||||||||| |||| ||||||||||||| ||||||||||||||| | ||| | ||||||||| |||||| ||||| |
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| T |
21543727 |
gtttactttcaaagaatgaggaatgcagattttcattaataacatcccaaccaattagctggtccttgtatcttgacacaacagaatt |
21543814 |
T |
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