View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11016_high_19 (Length: 368)
Name: NF11016_high_19
Description: NF11016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11016_high_19 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 20 - 357
Target Start/End: Complemental strand, 24809943 - 24809609
Alignment:
| Q |
20 |
tttgtggttccatttctctcagcagttcatttagatgagaaggtgtacaatgaagctaaaaatttcaatccttggagatggatggaacctgaaaatgagg |
119 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24809943 |
tttgtggttccatttctttcagcagttcatttagatgagaaggtgtacaatgaagctaaaaatttcaatccttggagatggatggaacctgaaaatgagg |
24809844 |
T |
|
| Q |
120 |
ttaatccacataccattttagtgaatactgcatatatataattttgtacttgtatttcnnnnnnnntttcttaattgttatggtctcaattatgaaggaa |
219 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
24809843 |
ttaatccacataacattttagtgaatactgtatata---atttttgtacttgtatttcaaattttttttcttaattgttatggtctcaattatgaaggaa |
24809747 |
T |
|
| Q |
220 |
aagagaaattggagaagtagtccattttatgcaccctttggaggaggtgctagattttgtcctggagctgagctagctcgccttcaaattgctctttttc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24809746 |
aagagaaattggagaagtagtccattttatgcaccctttggaggaggtgctagattttgtcctggagctgagctagctcgccttcaaattgctctttttc |
24809647 |
T |
|
| Q |
320 |
ttcattactttgttacaaactataggtaatgcctctct |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24809646 |
ttcattactttgttacaaactataggtaatgcctctct |
24809609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University