View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11016_high_22 (Length: 318)
Name: NF11016_high_22
Description: NF11016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11016_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 21 - 288
Target Start/End: Complemental strand, 330314 - 330047
Alignment:
| Q |
21 |
agagcctcgtggcttaagtgctcttaggttgcaatcaaggtcacactaacttcatgtgttttaaatacttaagatttgaaacaaatactaaacaagcaaa |
120 |
Q |
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| T |
330314 |
agagcctcgtggcttaagtgctcttaggttgcaatcaaggccacactaacttcatgtgttttaaatacttaagatttgaaacaaatactaaacaagcaaa |
330215 |
T |
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| Q |
121 |
caaaatccaatacttatgattctcatcaaaagaaatgtgtttatagatgcatacagttacaaatagaacaatttctcctatcaaattgaaattttgcaca |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
330214 |
caaaatccaatacttatgattctcatcaaaagaaatgtgtttatagatgcatacagttacaaatagaacaatttctcccatcaaattgaaattttgcaca |
330115 |
T |
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| Q |
221 |
ttccattgttggtaattcttaatattttatgtaaaatagcaaaatacagagacttgcaatctattggt |
288 |
Q |
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||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
330114 |
ttccattactggtaattcttaatattttatgtaaaatagtaaaatacagagacttgcaatctattggt |
330047 |
T |
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