View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11016_high_24 (Length: 296)
Name: NF11016_high_24
Description: NF11016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11016_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 33126511 - 33126774
Alignment:
| Q |
19 |
catatagcttctgaatcgcgaccagccacatgctactatttgtagcttcaccaatttcaggtccaaaactgtatttgagacgtgagaaagataattgaaa |
118 |
Q |
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| T |
33126511 |
catatagcttctgaatcgcagccaaccacatgctactatttgtagctgcaccaatttcaggtccaaaactgtatttgagacgtgagaaagataattgaaa |
33126610 |
T |
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| Q |
119 |
cgtaaatccaaacatcgactatatatctaacaagaatgaataaacataagatagaaatatactaacacttagagagggctgtagaagactttggatcaaa |
218 |
Q |
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| T |
33126611 |
cgtaaatccaaacatcgactatacatctaacaagaatgaataaacataagatagaaatatactaacacttagagagggctgtagaagactttggatcaaa |
33126710 |
T |
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| Q |
219 |
accaataatcaaagtgagcatagggataaaaattcctccacctcctacccctcctacacttccc |
282 |
Q |
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| T |
33126711 |
accaatgatcaaagtgagcatagggataaaaattcctccacctcctacccctcctacacttccc |
33126774 |
T |
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Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 195 - 282
Target Start/End: Complemental strand, 7568728 - 7568641
Alignment:
| Q |
195 |
ggctgtagaagactttggatcaaaaccaataatcaaagtgagcatagggataaaaattcctccacctcctacccctcctacacttccc |
282 |
Q |
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| T |
7568728 |
ggctgtagaagacttgggatcaaagccaatgatcaaagcaagcatagggacaaaaattccaccacctcctacacctccaacacttccc |
7568641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 32663744 - 32663699
Alignment:
| Q |
94 |
tgagacgtgagaaagataattgaaacgtaaatccaaacatcgacta |
139 |
Q |
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|||||||||||||||| |||| ||| |||||||||||||| ||||| |
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| T |
32663744 |
tgagacgtgagaaagacaattcaaatgtaaatccaaacattgacta |
32663699 |
T |
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