View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11016_high_6 (Length: 527)

Name: NF11016_high_6
Description: NF11016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11016_high_6
NF11016_high_6
[»] chr3 (10 HSPs)
chr3 (157-343)||(35176169-35176355)
chr3 (19-136)||(35176339-35176455)
chr3 (364-406)||(42147554-42147596)
chr3 (364-412)||(42146800-42146847)
chr3 (364-412)||(50305468-50305516)
chr3 (363-412)||(42996325-42996374)
chr3 (364-412)||(46580364-46580412)
chr3 (364-404)||(50306531-50306571)
chr3 (364-412)||(51491709-51491757)
chr3 (365-412)||(51492457-51492504)
[»] chr8 (4 HSPs)
chr8 (365-471)||(10500953-10501059)
chr8 (364-412)||(35885336-35885384)
chr8 (364-421)||(10501903-10501960)
chr8 (364-404)||(788026-788066)
[»] chr2 (5 HSPs)
chr2 (364-421)||(5504344-5504401)
chr2 (364-404)||(42946477-42946517)
chr2 (364-421)||(5505211-5505268)
chr2 (363-404)||(26021919-26021960)
chr2 (364-397)||(41677040-41677073)
[»] chr4 (7 HSPs)
chr4 (364-404)||(24471830-24471870)
chr4 (364-404)||(5825334-5825374)
chr4 (363-421)||(38320419-38320477)
chr4 (368-421)||(38321293-38321346)
chr4 (364-412)||(35428159-35428207)
chr4 (364-412)||(49708725-49708773)
chr4 (364-412)||(52915853-52915901)
[»] chr1 (7 HSPs)
chr1 (364-412)||(46358609-46358657)
chr1 (364-406)||(15374703-15374745)
chr1 (365-412)||(4124701-4124748)
chr1 (365-412)||(49961481-49961528)
chr1 (364-406)||(15373957-15373999)
chr1 (364-401)||(4125428-4125465)
chr1 (364-404)||(3788435-3788475)
[»] scaffold0016 (1 HSPs)
scaffold0016 (364-406)||(67247-67289)
[»] chr7 (2 HSPs)
chr7 (364-412)||(9378729-9378777)
chr7 (372-421)||(34996885-34996934)
[»] chr5 (4 HSPs)
chr5 (364-412)||(1282254-1282302)
chr5 (364-404)||(30002864-30002904)
chr5 (364-404)||(42310849-42310889)
chr5 (363-412)||(1282967-1283016)
[»] scaffold1052 (1 HSPs)
scaffold1052 (364-404)||(330-370)
[»] chr6 (1 HSPs)
chr6 (364-412)||(3802064-3802112)


Alignment Details
Target: chr3 (Bit Score: 175; Significance: 6e-94; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 157 - 343
Target Start/End: Complemental strand, 35176355 - 35176169
Alignment:
Q  157 agaaaagactaacattgttcgatggttttgatgctgtaaaattaatttgtagattgggcaactagatttgatgcagtaaaattaatttgtaaattaggca 256  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  35176355 agaaaagactaacattgttcaatggttttgatgctgtaaaattaatttgtagattgggcaactagatttgatgctgtaaaattaatttgtaaattaggca 35176256  T
Q  257 attccagttgttaaactcttacacctggatagatgcttccttcccttttgactttagctatacattaatcgagaaatgtgtttcttt 343  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35176255 actccagttgttaaactcttacacctggatagatgcttccttcccttttgactttagctatacattaatcgagaaatgtgtttcttt 35176169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 35176455 - 35176339
Alignment:
Q  19 aattagtggtccacaaatgcttgaaccacatcgagtttgtaacttaataatcaaatggacgctgaaaatggaatcagaagactttaacattttttttagg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  35176455 aattagtggtccacaaatgcttgaaccacatcgagtttgtaacttaataatcaaatggacgctgaaaatggaatcagaagac-ttaacattatttttagg 35176357  T
Q  119 gagaaaagactaacattg 136  Q
    ||||||||||||||||||    
T  35176356 gagaaaagactaacattg 35176339  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 406
Target Start/End: Complemental strand, 42147596 - 42147554
Alignment:
Q  364 ggtggcatttagggtgggaatggaaaagattttcccaccatgg 406  Q
    |||||||||||||||||||| || |||||||||||||||||||    
T  42147596 ggtggcatttagggtgggaaggggaaagattttcccaccatgg 42147554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 412
Target Start/End: Original strand, 42146800 - 42146847
Alignment:
Q  364 ggtggcatttagggtgggaatggaaaagattttcccaccatggaaaagt 412  Q
    ||||||||||||||||||| ||| ||||||||||||||||||| |||||    
T  42146800 ggtggcatttagggtggga-tgggaaagattttcccaccatgggaaagt 42146847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 412
Target Start/End: Complemental strand, 50305516 - 50305468
Alignment:
Q  364 ggtggcatttagggtgggaatggaaaagattttcccaccatggaaaagt 412  Q
    ||||||||||||||||||   |||||||| |||||||||||||||||||    
T  50305516 ggtggcatttagggtgggtgaggaaaagaatttcccaccatggaaaagt 50305468  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 412
Target Start/End: Complemental strand, 42996374 - 42996325
Alignment:
Q  363 cggtggcatttagggtgggaatggaaaagattttcccaccatggaaaagt 412  Q
    |||||||||||||| |||| | || ||||||||||||||||| |||||||    
T  42996374 cggtggcatttaggatgggtaagggaaagattttcccaccatagaaaagt 42996325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 412
Target Start/End: Original strand, 46580364 - 46580412
Alignment:
Q  364 ggtggcatttagggtgggaatggaaaagattttcccaccatggaaaagt 412  Q
    |||||||||||||||||| | |  ||||||||||| |||||||||||||    
T  46580364 ggtggcatttagggtgggtaggagaaagattttcctaccatggaaaagt 46580412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 404
Target Start/End: Complemental strand, 50306571 - 50306531
Alignment:
Q  364 ggtggcatttagggtgggaatggaaaagattttcccaccat 404  Q
    |||||||||||||||||||| || ||||| |||||||||||    
T  50306571 ggtggcatttagggtgggaaggggaaagagtttcccaccat 50306531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 412
Target Start/End: Original strand, 51491709 - 51491757
Alignment:
Q  364 ggtggcatttagggtgggaatggaaaagattttcccaccatggaaaagt 412  Q
    ||||| |||||||||||||| || ||||||||| |||||||||| ||||    
T  51491709 ggtggtatttagggtgggaaggggaaagatttttccaccatggacaagt 51491757  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 412
Target Start/End: Complemental strand, 51492504 - 51492457
Alignment:
Q  365 gtggcatttagggtgggaatgga-aaagattttcccaccatggaaaagt 412  Q
    |||||||||||||||||| |||| ||||||||||||||||||| |||||    
T  51492504 gtggcatttagggtggga-tggagaaagattttcccaccatgggaaagt 51492457  T

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Target: chr8 (Bit Score: 91; Significance: 7e-44; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 365 - 471
Target Start/End: Original strand, 10500953 - 10501059
Alignment:
Q  365 gtggcatttagggtgggaatggaaaagattttcccaccatggaaaagtgatttttgaatgttcaattaaatgaagaccatgatatcaccatactctctca 464  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  10500953 gtggcatttagggtgggaatggaaaagatttttccaccatgggaaagtgatttttgaatgttcgattaaatgaagaccatgatattaccatactctctca 10501052  T
Q  465 acactat 471  Q
    |||||||    
T  10501053 acactat 10501059  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 364 - 412
Target Start/End: Original strand, 35885336 - 35885384
Alignment:
Q  364 ggtggcatttagggtgggaatggaaaagattttcccaccatggaaaagt 412  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  35885336 ggtggcatttagggtgggaatggaaaagagtttcccaccatagaaaagt 35885384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 421
Target Start/End: Complemental strand, 10501960 - 10501903
Alignment:
Q  364 ggtggcatttagggtgggaatggaaaagattttcccaccatggaaaagtgatttttga 421  Q
    |||||||||||||||||||| |||||||||||| | ||||||| ||||| ||||||||    
T  10501960 ggtggcatttagggtgggaagggaaaagatttttctaccatgggaaagtaatttttga 10501903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 404
Target Start/End: Original strand, 788026 - 788066
Alignment:
Q  364 ggtggcatttagggtgggaatggaaaagattttcccaccat 404  Q
    ||||||||||||||||||||||| ||| | |||||||||||    
T  788026 ggtggcatttagggtgggaatgggaaaaagtttcccaccat 788066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 421
Target Start/End: Original strand, 5504344 - 5504401
Alignment:
Q  364 ggtggcatttagggtgggaatggaaaagattttcccaccatggaaaagtgatttttga 421  Q
    |||||||||||||||||||| || ||||| |||||||| || ||||||||||||||||    
T  5504344 ggtggcatttagggtgggaaggggaaagagtttcccactatagaaaagtgatttttga 5504401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 404
Target Start/End: Complemental strand, 42946517 - 42946477
Alignment:
Q  364 ggtggcatttagggtgggaatggaaaagattttcccaccat 404  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  42946517 ggtggcatttagggtgggaatgggaaagagtttcccaccat 42946477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 421
Target Start/End: Complemental strand, 5505268 - 5505211
Alignment:
Q  364 ggtggcatttagggtgggaatggaaaagattttcccaccatggaaaagtgatttttga 421  Q
    ||||||||||||||||||||  | ||||| ||| ||||||||| |||||| |||||||    
T  5505268 ggtggcatttagggtgggaagaggaaagagttttccaccatgggaaagtgttttttga 5505211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 404
Target Start/End: Complemental strand, 26021960 - 26021919
Alignment:
Q  363 cggtggcatttagggtgggaatggaaaagattttcccaccat 404  Q
    ||||||||||||||||||||| || ||||| |||||||||||    
T  26021960 cggtggcatttagggtgggaaggggaaagagtttcccaccat 26021919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 397
Target Start/End: Complemental strand, 41677073 - 41677040
Alignment:
Q  364 ggtggcatttagggtgggaatggaaaagattttc 397  Q
    ||||||||||||||||||||||||||||| ||||    
T  41677073 ggtggcatttagggtgggaatggaaaagagtttc 41677040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 404
Target Start/End: Original strand, 24471830 - 24471870
Alignment:
Q  364 ggtggcatttagggtgggaatggaaaagattttcccaccat 404  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  24471830 ggtggcatttagggtgggaatggaaaagagtttcccaccat 24471870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 404
Target Start/End: Original strand, 5825334 - 5825374
Alignment:
Q  364 ggtggcatttagggtgggaatggaaaagattttcccaccat 404  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  5825334 ggtggcatttagggtgggaatgggaaagagtttcccaccat 5825374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 421
Target Start/End: Original strand, 38320419 - 38320477
Alignment:
Q  363 cggtggcatttagggtgggaatggaaaagattttcccaccatggaaaagtgatttttga 421  Q
    |||||||||||||||||||||  | ||||| |||||||||| || |||||| |||||||    
T  38320419 cggtggcatttagggtgggaagaggaaagagtttcccaccacgggaaagtgttttttga 38320477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 421
Target Start/End: Complemental strand, 38321346 - 38321293
Alignment:
Q  368 gcatttagggtgggaatggaaaagattttcccaccatggaaaagtgatttttga 421  Q
    |||||||||||||||| |||||||| |||||||  || | ||||||||||||||    
T  38321346 gcatttagggtgggaagggaaaagagtttcccattataggaaagtgatttttga 38321293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 412
Target Start/End: Complemental strand, 35428207 - 35428159
Alignment:
Q  364 ggtggcatttagggtgggaatggaaaagattttcccaccatggaaaagt 412  Q
    |||||||||||||||||||||||  |||| |||||||| |||| |||||    
T  35428207 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagt 35428159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 412
Target Start/End: Complemental strand, 49708773 - 49708725
Alignment:
Q  364 ggtggcatttagggtgggaatggaaaagattttcccaccatggaaaagt 412  Q
    ||||||||||||||||||   || ||||| |||||||||||||||||||    
T  49708773 ggtggcatttagggtgggtgagggaaagaatttcccaccatggaaaagt 49708725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 412
Target Start/End: Original strand, 52915853 - 52915901
Alignment:
Q  364 ggtggcatttagggtgggaatggaaaagattttcccaccatggaaaagt 412  Q
    |||||||||||||||||| | |||||||||| ||| ||||||| |||||    
T  52915853 ggtggcatttagggtgggtagggaaaagattctcctaccatgggaaagt 52915901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 412
Target Start/End: Complemental strand, 46358657 - 46358609
Alignment:
Q  364 ggtggcatttagggtgggaatggaaaagattttcccaccatggaaaagt 412  Q
    |||||||||||||||||||  |||||||||||||||||||||| |||||    
T  46358657 ggtggcatttagggtgggatgggaaaagattttcccaccatgggaaagt 46358609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 406
Target Start/End: Complemental strand, 15374745 - 15374703
Alignment:
Q  364 ggtggcatttagggtgggaatggaaaagattttcccaccatgg 406  Q
    |||||||||||||||||||| || |||||||||||||||||||    
T  15374745 ggtggcatttagggtgggaaggggaaagattttcccaccatgg 15374703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 412
Target Start/End: Original strand, 4124701 - 4124748
Alignment:
Q  365 gtggcatttagggtgggaatggaaaagattttcccaccatggaaaagt 412  Q
    |||||||||||||||||||||| ||||| |||||||| |||| |||||    
T  4124701 gtggcatttagggtgggaatgggaaagagtttcccactatgggaaagt 4124748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 412
Target Start/End: Complemental strand, 49961528 - 49961481
Alignment:
Q  365 gtggcatttagggtgggaatggaaaagattttcccaccatggaaaagt 412  Q
    |||||||||||||||||||||||||||| ||| | || ||||||||||    
T  49961528 gtggcatttagggtgggaatggaaaagagttttctactatggaaaagt 49961481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 406
Target Start/End: Original strand, 15373957 - 15373999
Alignment:
Q  364 ggtggcatttagggtgggaatggaaaagattttcccaccatgg 406  Q
    |||||||||||||||||||  || |||||||||||||||||||    
T  15373957 ggtggcatttagggtgggatggggaaagattttcccaccatgg 15373999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 401
Target Start/End: Complemental strand, 4125465 - 4125428
Alignment:
Q  364 ggtggcatttagggtgggaatggaaaagattttcccac 401  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  4125465 ggtggcatttagggtgggaatgggaaagagtttcccac 4125428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 404
Target Start/End: Original strand, 3788435 - 3788475
Alignment:
Q  364 ggtggcatttagggtgggaatggaaaagattttcccaccat 404  Q
    |||||||||||||||||||| || ||||| |||||||||||    
T  3788435 ggtggcatttagggtgggaaggggaaagagtttcccaccat 3788475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 406
Target Start/End: Original strand, 67247 - 67289
Alignment:
Q  364 ggtggcatttagggtgggaatggaaaagattttcccaccatgg 406  Q
    |||||||||||||||||||| || |||||||||||||||||||    
T  67247 ggtggcatttagggtgggaaggggaaagattttcccaccatgg 67289  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 412
Target Start/End: Original strand, 9378729 - 9378777
Alignment:
Q  364 ggtggcatttagggtgggaatggaaaagattttcccaccatggaaaagt 412  Q
    |||||||||||||||||||| || ||||||||| ||||||||| |||||    
T  9378729 ggtggcatttagggtgggaaggggaaagatttttccaccatgggaaagt 9378777  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 421
Target Start/End: Original strand, 34996885 - 34996934
Alignment:
Q  372 ttagggtgggaatggaaaagattttcccaccatggaaaagtgatttttga 421  Q
    ||||||||||||||  ||||| |||||||| |||| ||||||||||||||    
T  34996885 ttagggtgggaatgagaaagagtttcccactatgggaaagtgatttttga 34996934  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 412
Target Start/End: Original strand, 1282254 - 1282302
Alignment:
Q  364 ggtggcatttagggtgggaatggaaaagattttcccaccatggaaaagt 412  Q
    ||||||||||||||||||||||| ||||| |||||||| |||| |||||    
T  1282254 ggtggcatttagggtgggaatgggaaagagtttcccactatgggaaagt 1282302  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 404
Target Start/End: Original strand, 30002864 - 30002904
Alignment:
Q  364 ggtggcatttagggtgggaatggaaaagattttcccaccat 404  Q
    |||||||||||||||||||| || |||||||||||||||||    
T  30002864 ggtggcatttagggtgggaaggggaaagattttcccaccat 30002904  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 404
Target Start/End: Original strand, 42310849 - 42310889
Alignment:
Q  364 ggtggcatttagggtgggaatggaaaagattttcccaccat 404  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  42310849 ggtggcatttagggtgggaatgggaaagagtttcccaccat 42310889  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 412
Target Start/End: Complemental strand, 1283016 - 1282967
Alignment:
Q  363 cggtggcatttagggtgggaatggaaaagattttcccaccatggaaaagt 412  Q
    ||||| |||||||||||||||||| ||||| |||||||| |||| |||||    
T  1283016 cggtgacatttagggtgggaatgggaaagagtttcccactatgggaaagt 1282967  T

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Target: scaffold1052 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1052
Description:

Target: scaffold1052; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 404
Target Start/End: Original strand, 330 - 370
Alignment:
Q  364 ggtggcatttagggtgggaatggaaaagattttcccaccat 404  Q
    |||| ||||||||||||| | ||||||||||||||||||||    
T  330 ggtgacatttagggtgggtaaggaaaagattttcccaccat 370  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 412
Target Start/End: Original strand, 3802064 - 3802112
Alignment:
Q  364 ggtggcatttagggtgggaatggaaaagattttcccaccatggaaaagt 412  Q
    |||||||||||||||||||| || ||||| |||| ||| ||||||||||    
T  3802064 ggtggcatttagggtgggaacgggaaagagtttcacactatggaaaagt 3802112  T

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