View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11016_high_8 (Length: 522)
Name: NF11016_high_8
Description: NF11016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11016_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 20 - 501
Target Start/End: Complemental strand, 43336832 - 43336328
Alignment:
| Q |
20 |
tgtgtttcagttggtttcaagcgcgatggtaggcctagtgccaatgctgttattgaagaaattgatggtaacaaatctgaagttgttgaacagtttgcac |
119 |
Q |
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| T |
43336832 |
tgtgtttcagttggtttcaagcgcaatggtaggcctagtgccaatgctgttattgaagaaattgatggtaacaaatctgaagttgttgaacagtttgcac |
43336733 |
T |
|
| Q |
120 |
tttgcaggctcctttgttatcaggaggtcactaagcaattgatggatcttttaaataaactcagtattcaaccacatatgttgctacaagcaacctccat |
219 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43336732 |
tttgcaggctccgttgttatcaggaggtcactaagcaattgatggatcttttaaataaactcagtattcaaccacatatgttgctacaagcaacctccat |
43336633 |
T |
|
| Q |
220 |
cttaaagggggaacactcaattaatcaaattcatatttcatctaatgctcaaggtatttcttttaatgtctcttcaagctcatttatttgtttttaattg |
319 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43336632 |
cttaaagggtgaacactcaattaatcaaattcatatttcatctaatgctcaaggtatttcttttaatgtctcttcaagctcatttatttgtttttaattg |
43336533 |
T |
|
| Q |
320 |
ctttagtgattctacgtgg----------------------tttaagatattttgattctcacttcagaaaaagtttgacaatattttgtccgatgtggt |
397 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43336532 |
ctttagtgattctacgtggatactggacttgggagcaatgatttaagatattttgattctcacttcagaaaaaatttgacaatattttgtccgatgtggt |
43336433 |
T |
|
| Q |
398 |
actctttaacaatttactttaagagtcagacctccaa-ttttatatgaacgaccctggttaggacaataaattgaatcttattaatgtgtttttacatgc |
496 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43336432 |
actctttaacaatttactttaagagtcagacctccaatttttatatgaacgaccctagttaggacaataaattgaatcttattaatgtgtttttacatgc |
43336333 |
T |
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| Q |
497 |
ttcac |
501 |
Q |
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||||| |
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| T |
43336332 |
ttcac |
43336328 |
T |
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