View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11016_low_12 (Length: 444)
Name: NF11016_low_12
Description: NF11016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11016_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 3599059 - 3598621
Alignment:
| Q |
1 |
atttgaagtgatactagttttataatgaatccattttatggtttttaatcattaatcaaacataataattttctaaaagttggtttgagtgctatactac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3599059 |
atttgaagtgatactagttttataatgaatccattttatggtttttaatcattaatcaaacataataattttctaaaagttggtttgagtgctatactac |
3598960 |
T |
|
| Q |
101 |
agaactaagattaaaaataaaaggtgtgagattacccgtgcatggataaactcttcaacacgtccatttgtaaaacgtccaagcagacgtggtccctgac |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
3598959 |
agaactaagattaaaaataaaaagtgtgagattacccgtgcatggataaactcttcaacacgtccatttgtaaaacgtcctagtagacgtggtccctgac |
3598860 |
T |
|
| Q |
201 |
cattctttgacatgtactcaaatgtccgtatttcatcatccctatcaaagaaaatttccacaccctccccgtagatcctaacaagaacttttcgtgaggt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3598859 |
cattctttgacatgtactcaaatgtccgtatttcatcatccctatcaaagaaaatttccacaccctccccgtagatcctaacaagaacttttcgtgaggt |
3598760 |
T |
|
| Q |
301 |
ttcctcagttgtagctggccactttatttcaaatacctcatttgtcattgcccccttgagagggatcacctgtaacgcatttgcatctagtacatcctcc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3598759 |
ttcctcagttgtagctggccactttatttcaaatacctcatttgtcattgcccccttgagagggatcacctgtaacgcatttgcatctagtacatcctcc |
3598660 |
T |
|
| Q |
401 |
catttacctgctaatgatatcagaatctcctttgcttct |
439 |
Q |
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| T |
3598659 |
catttacctgctaatgatatcagaatctcctttgcttct |
3598621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 438
Target Start/End: Original strand, 15547148 - 15547404
Alignment:
| Q |
182 |
agcagacgtggtccctgaccattctttgacatgtactcaaatgtccgtatttcatcatccctatcaaagaaaatttccacaccctccccgtagatcctaa |
281 |
Q |
| |
|
|||| ||| |||||||| ||||||||||| ||| | | ||||| || ||||| | ||||||||||||||||| || ||| || || ||||| |||| |
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| T |
15547148 |
agcaaacgaggtccctgtccattctttgatatgaatgcgaatgttcgaatttcgttttccctatcaaagaaaatgtcagtaccttcaccatagattctaa |
15547247 |
T |
|
| Q |
282 |
caagaacttttcgtgaggtttcctcagttgtagctggccactttatttcaaatacctcatttgtcattgcccccttgagagggatcacctgtaacgcatt |
381 |
Q |
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||||||| |||| ||| |||| | ||| | | |||| ||||| | ||||||||||| ||||||||||| || ||||| || || | ||| |||| |
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| T |
15547248 |
caagaacctttcttgacatttcaccttctgttgtttgccattttatctggaatacctcattggtcattgcccctttaagaggaataacttccaactcatt |
15547347 |
T |
|
| Q |
382 |
tgcatctagtacatcctcccatttacctgctaatgatatcagaatctcctttgcttc |
438 |
Q |
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|||||| | ||||| ||||||||| |||||||||| ||| ||||| |||||||| |
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| T |
15547348 |
tgcatccaatacattttcccatttatttgctaatgatttcaatatctcttttgcttc |
15547404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 254
Target Start/End: Original strand, 14334642 - 14334763
Alignment:
| Q |
133 |
tacccgtgcatggataaactcttcaacacgtccatttgtaaaacgtccaagcagacgtggtccctgaccattctttgacatgtactcaaatgtccgtatt |
232 |
Q |
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|||||| ||||| || ||||||||||| || ||| | || || || ||||| || ||||| ||||| || ||||| ||||| |||||||||| | ||| |
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| T |
14334642 |
tacccgggcatgaatgaactcttcaactcgaccagtcgtgaaccgaccaagaaggcgtggaccctgtccgttcttcgacatacactcaaatgtttggatt |
14334741 |
T |
|
| Q |
233 |
tcatcatccctatcaaagaaaa |
254 |
Q |
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||||||||||||| ||||||| |
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| T |
14334742 |
tcatcatccctattgaagaaaa |
14334763 |
T |
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