View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11016_low_14 (Length: 433)
Name: NF11016_low_14
Description: NF11016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11016_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 39582604 - 39582186
Alignment:
| Q |
1 |
cacaattttatcagttatcttcgcgatgcattgcggaagaggggaatcaatccattctttgatgataagaatctgagaataggggaagatatatcacctg |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39582604 |
cacaattttatcggttatcttcgcgatgcattgcggaagaggggaatcaatccattctttgatgataagaatctgagaataggggaagatatatcacctg |
39582505 |
T |
|
| Q |
101 |
cacttttaaaagccattgaagaatctaagatctcagttattgttttttcggagaattatgcatcttcgaggtggtgccttggtgaactagtgaagatcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39582504 |
cacttttaaaagccattgaagaatctaagatctcagttattgttttttcggagaattatgcatcttcgaggtggtgccttggtgaactagtgaagatcat |
39582405 |
T |
|
| Q |
201 |
caaatgcatgaaaagaaacaataaacaaattaccttcccaattttttactgtgttgatctatcggatgtacgaaaccaaagaaatagttatggggaagcc |
300 |
Q |
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| T |
39582404 |
caaatgcatgaaaagaaacaataaacaaactactttcccaattttttactgtgctgatctatcggatgtacgaaacgaaagaaatagttatggggaagcc |
39582305 |
T |
|
| Q |
301 |
atggttgctcatgagaataggttcggaaaagattcagaaaatataaaagcatgtaaagcagcaatgtctgaagctgcagacttgaaaggtcaccatatcc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39582304 |
atggttgctcatgagaataggttcggaaaagattcagaaaatataaaagcatgtaaagcagcattgtctgaagctgcagacttgaaaggtcaccatatcc |
39582205 |
T |
|
| Q |
401 |
acaatgggtatgtaactac |
419 |
Q |
| |
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||||| ||||||||||||| |
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| T |
39582204 |
acaattggtatgtaactac |
39582186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 39619176 - 39619593
Alignment:
| Q |
1 |
cacaattttatcagttatcttcgcgatgcattgcggaagaggggaatcaatccattctttgatgataagaatctgagaataggggaagatatatcacctg |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| | | ||||||||||| | ||||||||||| ||||||||||||||||||||||| || ||||||| |
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| T |
39619176 |
cacaattttattggttatcttcgcgatgcattgcagcatcggggaatcaatgctttctttgatgacaagaatctgagaataggggaagacatttcacctg |
39619275 |
T |
|
| Q |
101 |
cacttttaaaagccattgaagaatctaagatctcagttattgttttttcggagaattatgcatcttcgaggtggtgccttggtgaactagtgaagatcat |
200 |
Q |
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|||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| || ||||| || |
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| T |
39619276 |
cactttcaaaagccattgaagaatctaagatcgcagttattgttttttctgagaattatgcatcttccaggtggtgccttggcgaactcgttaagataat |
39619375 |
T |
|
| Q |
201 |
caaatgcatgaaaagaaacaataaacaaattaccttcccaattttttactgtgttgatctatcggatgtacgaaaccaaagaaatagttatggggaagcc |
300 |
Q |
| |
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| |||| | |||||||||||| ||||||||| | || ||||| |||| | |||||||| ||| |||||| || | || | ||||||||| | | ||||| |
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| T |
39619376 |
cgaatgtacgaaaagaaacaaaaaacaaatttcttttccaatctttttccatgttgatccatcagatgtaagacatcagaaaaatagttacgagaaagcc |
39619475 |
T |
|
| Q |
301 |
atggttgctcatgagaataggttcggaaaagattcagaaaatataaaagcatgtaaagcagcaatgtctgaagctgcagacttgaaaggtcaccatatcc |
400 |
Q |
| |
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||||||| ||||||| || ||| |||||||| || |||||| |||||||||| | | ||||| |||||||||| |||||||||||||| ||||||||| |
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| T |
39619476 |
atggttgatcatgaggttaagtttggaaaagactctgaaaatgtaaaagcatggataacagcattgtctgaagcagcagacttgaaaggccaccatatca |
39619575 |
T |
|
| Q |
401 |
acaatgggtatgtaacta |
418 |
Q |
| |
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| | ||||||||||||| |
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|
| T |
39619576 |
ataccgggtatgtaacta |
39619593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 39577553 - 39577509
Alignment:
| Q |
1 |
cacaattttatcagttatcttcgcgatgcattgcggaagagggga |
45 |
Q |
| |
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|||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
39577553 |
cacaatgttatcagtcatcttcgcgatgcattgcggaagagggga |
39577509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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