View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11016_low_18 (Length: 383)
Name: NF11016_low_18
Description: NF11016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11016_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 373
Target Start/End: Complemental strand, 15079865 - 15079492
Alignment:
| Q |
19 |
gcaattttggtattgctccattggatgtataaccaaagctatgttttggagggtgctgcagtggtcttcgtattgagtgaaatcttgaagatagcataat |
118 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
15079865 |
gcaattttggtattgctctattggatgtataaccaaagctatgttttggagggtgctgcagtggtcttcgtattgagtgaaatcttgaagatagcatgat |
15079766 |
T |
|
| Q |
119 |
aacaaagactcccctttattcaaatagtaaacaaatttagtcacttttttccattcaatttttaaatttatattgacacaaactaaacagttcagctgaa |
218 |
Q |
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||||| |||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15079765 |
aacaatgacttccctatattgaaatagtaaacaaatttagtcacttttttccattcaatttttaaatttatattgacacaaactaaacagttcagctgaa |
15079666 |
T |
|
| Q |
219 |
ttcgttttgt-------------------atgtgatcagatcagactgtatcagttcacaagtcttgagcattactaatccatgcattgccaatgaacta |
299 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15079665 |
ttcgttttgtatgttcagtttcgttttgtatgtgatcagatcagactgtatcagttcacaagtcttgagcattactaatccatgcattgccaatgaacta |
15079566 |
T |
|
| Q |
300 |
tgaaataaggctttcattccaccaaattcccatgtgattgctaaccacctctacttcagctttagaaggttcat |
373 |
Q |
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| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
15079565 |
tcacataaggctttcattccaccaaattcccatgtgatcgctaaccacctctacttcagctttagaaggttcat |
15079492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 373
Target Start/End: Original strand, 15166383 - 15166753
Alignment:
| Q |
19 |
gcaattttggtattgctccattggatgtataaccaaagctatgttttggagggtgctgcagtggtcttcgtattgagtgaaatcttgaagatagcataat |
118 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15166383 |
gcaattttggtattgctctattggatgtataaccaaagctatgttttggagggtgctgcagtggtcttcgtattgagtgaaatcttgaagatagcataat |
15166482 |
T |
|
| Q |
119 |
aacaaagactcccctttattcaaatagtaaacaaatttagtcacttttttccattcaatttttaaatttatattgacacaaactaaacagttcagctgaa |
218 |
Q |
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||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15166483 |
aacaatgacttccctatattcaaatagtaaacaaatttagtcacttttttccattcaatttttaaatttatattgacacaaactaaacagttcagctgaa |
15166582 |
T |
|
| Q |
219 |
-------------------ttcgttttgtatgtgatcagatcagactgtatcagttcacaagtcttgagcattactaatccatgcattgccaatgaacta |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15166583 |
ttcgttttgtatgttcagtttcgttttgtatgtgatcagatcagactgtatcagttcacaagtcttgagcattactaatccatgcattgccaatgaacta |
15166682 |
T |
|
| Q |
300 |
tgaaataaggctttcattccaccaaattcccatgtgattgctaaccacctctacttcagctttagaaggttcat |
373 |
Q |
| |
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| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
15166683 |
tcacataaggctttcattccaccaaattcccatgtgattgctaaccacctcta---cagctttagaaggttcat |
15166753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 230 - 373
Target Start/End: Original strand, 15162041 - 15162176
Alignment:
| Q |
230 |
tgtgatcagatcagactgtatcagttcacaagtcttgagcattactaatccatgcattgccaatgaactatgaaataaggctttcattccaccaaattcc |
329 |
Q |
| |
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||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||| | |||||||||||| ||||||||||||| |
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| T |
15162041 |
tgtgatcagatcagactgtatcagttcacaagttttaag--------atccatgcattgccaatgaactatcacataaggctttcagtccaccaaattcc |
15162132 |
T |
|
| Q |
330 |
catgtgattgctaaccacctctacttcagctttagaaggttcat |
373 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
15162133 |
catgtgatcgctaaccacctctacttcagctttagaaggttcat |
15162176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 15158958 - 15159057
Alignment:
| Q |
19 |
gcaattttggtattgctccattggatgtataaccaaagctatgttttggagggtgctgcagtggtcttcgtattgagtgaaatct-tgaagatagcataa |
117 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||| |
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| T |
15158958 |
gcaattttggtatttctccattggatgtataaccaaagccatgttttggagggtgctgcagtggtcttcgtattgagtgagatctctgaggatagcataa |
15159057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 137 - 232
Target Start/End: Original strand, 15160208 - 15160303
Alignment:
| Q |
137 |
ttcaaatagtaaacaaatttagtcacttttttccattcaatttttaaatttatattgacacaaactaaacagttcagctgaattcgttttgtatgt |
232 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||| ||||||| ||||| |||||||||| |||||||||||||| |||||| |||| |
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| T |
15160208 |
ttcaaattgtaaacaaatttagttacttttttccattcaattttcaaatttagattgaaacaaactaaatagttcagctgaatttgttttgcatgt |
15160303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 238 - 373
Target Start/End: Original strand, 3478464 - 3478600
Alignment:
| Q |
238 |
gatcagactgtatcagttcacaagtcttgagcattactaatccatgcattgccaatgaa-ctatgaaataaggctttcattccaccaaattcccatgtga |
336 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||| | || | ||||||||| | ||||||||||| || | ||| |
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| T |
3478464 |
gatcagactgtatcagttaacaagtcttgagcattaccaatgcatgcattgccaatgaacccatcacataaggcttgtaatccaccaaatttccctctga |
3478563 |
T |
|
| Q |
337 |
ttgctaaccacctctacttcagctttagaaggttcat |
373 |
Q |
| |
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| || ||| || ||||||||| ||||||||||||||| |
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| T |
3478564 |
tcgccaactacatctacttcaactttagaaggttcat |
3478600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 238 - 337
Target Start/End: Complemental strand, 3538052 - 3537953
Alignment:
| Q |
238 |
gatcagactgtatcagttcaca--agtcttgagcattactaatccatgcattgccaatgaactatgaaataaggctttcattccaccaaattcccatgtg |
335 |
Q |
| |
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||||||| ||||||||| |||| |||||| || ||||| ||| ||||||||||||||||| || | |||||||||||| ||||||||||| || |||| |
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| T |
3538052 |
gatcagaatgtatcagtacacacaagtcttaagaattacaaat--atgcattgccaatgaaccatcacataaggctttcaatccaccaaatttccctgtg |
3537955 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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