View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11016_low_21 (Length: 321)
Name: NF11016_low_21
Description: NF11016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11016_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 19 - 310
Target Start/End: Original strand, 1332531 - 1332801
Alignment:
| Q |
19 |
cttatcacatactttatcaactttgtgctggatcttcacctcatctcttaaaggtgtattttctatacaacctatcaattagttgggatacat--gtata |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1332531 |
cttatcacatactttatcaactttgtgctggatcttcacctcatct--taaaggtgtattttctatacaacctatcaattagttgggatacatatgtata |
1332628 |
T |
|
| Q |
117 |
cttctgtatcatctttgatatctcaatgaccatctttgagataatctttttaaatatcataccagttgagggtggtaatcctcctaaatatgctcagaga |
216 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1332629 |
cttctgtatcat---------------------ctttgagataatctttttaaatatcataccagttgagggtggtaatcctcctaaatatgctcagaga |
1332707 |
T |
|
| Q |
217 |
acacaattgttaacagaaaactaccaagttgtgtgattgatttcctctcggctttgagcttctatgacagttttgcttttacagccgtgtctct |
310 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1332708 |
acacaattgttgacagaaaactaccaagttgtgtgattgatttcccctcggctttgagcttctatgacagttttgcttttacagccgtgtctct |
1332801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 169 - 310
Target Start/End: Complemental strand, 43497518 - 43497377
Alignment:
| Q |
169 |
aatatcataccagttgagggtggtaatcctcctaaatatgctcagagaacacaattgttaacagaaaactaccaagttgtgtgattgatttcctctcggc |
268 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43497518 |
aatatcataccagttaagggtggtaatcctcctaaatatgctcagagaacacagttgttaacagaaaactaccaagttgtgtgattgatttcctctcggc |
43497419 |
T |
|
| Q |
269 |
tttgagcttctatgacagttttgcttttacagccgtgtctct |
310 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
43497418 |
tttgagcttctatgacagttttgcttttacagccgtgtctct |
43497377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 33972201 - 33972353
Alignment:
| Q |
19 |
cttatcacatactttatcaactttgtgctggatcttcacctcatctcttaaaggtgtattttctatacaacctatcaattagttgggatacatgtatact |
118 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||| |||||||| |
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| T |
33972201 |
cttatcacatattttatcaactttgtgctggatcttcacctcatct--taaaggtgtattttctatacaacttatcaattagtttggatacttgtatact |
33972298 |
T |
|
| Q |
119 |
tctgtatcatctttgatatctcaatgaccatctttgagataatctttttaaatat |
173 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33972299 |
tctgtaccatctttgatatctcaatgaccatctttgagataatctttttaaatat |
33972353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 185 - 294
Target Start/End: Original strand, 28839274 - 28839383
Alignment:
| Q |
185 |
agggtggtaatcctcctaaatatgctcagagaacacaattgttaacagaaaactaccaagttgtgtgattgatttcctctcggctttgagcttctatgac |
284 |
Q |
| |
|
||||||||| |||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||| ||||| ||| |
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| T |
28839274 |
agggtggtagtcctcccaaatatgttcagagaacacaattgttaatagaaaactaccaagttgtgtgattggtttcatctcggctttgagtttctaagac |
28839373 |
T |
|
| Q |
285 |
agttttgctt |
294 |
Q |
| |
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|||||||||| |
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| T |
28839374 |
agttttgctt |
28839383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 169 - 310
Target Start/End: Complemental strand, 36084232 - 36084091
Alignment:
| Q |
169 |
aatatcataccagttgagggtggtaatcctcctaaatatgctcagagaacacaattgttaacagaaaactaccaagttgtgtgattgatttcctctcggc |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36084232 |
aatatcataccagttgagggtggtaatcctcctaaatatgctaagagaacacaattggtaacagaaaactaccaagttgtgtgattgatttcctctcggc |
36084133 |
T |
|
| Q |
269 |
tttgagcttctatgacagttttgcttttacagccgtgtctct |
310 |
Q |
| |
|
|||||||||||||||||||||| || ||| |||||||||||| |
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|
| T |
36084132 |
tttgagcttctatgacagttttcctcttatagccgtgtctct |
36084091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 172 - 310
Target Start/End: Complemental strand, 50603177 - 50603036
Alignment:
| Q |
172 |
atcataccagttgagggtggtaatcctcctaaatatgctcagagaacacaattgttaacagaaaactaccaagttgtgtgattgatttcct---ctcggc |
268 |
Q |
| |
|
||||||||| || |||||||||||||||| ||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| | || ||| |
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|
| T |
50603177 |
atcataccacttaagggtggtaatcctcccaaacatgctcagagaacacagttgataacagaaaactaccaagttgtgtgattgattttttaatcttggc |
50603078 |
T |
|
| Q |
269 |
tttgagcttctatgacagttttgcttttacagccgtgtctct |
310 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
50603077 |
tttgagcttctatgaaagttttgcttttacagccgtgtctct |
50603036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 185 - 300
Target Start/End: Complemental strand, 50609700 - 50609584
Alignment:
| Q |
185 |
agggtggtaatcctcctaaatatgctcagagaacacaattgttaacagaaaactaccaagttgtgtgattgatt-tcctctcggctttgagcttctatga |
283 |
Q |
| |
|
||||||||||||| || |||| ||||||||||||||| || |||| |||||||| |||||||| ||||||||| |||| || ||||| | |||||||| |
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| T |
50609700 |
agggtggtaatccgcccaaatttgctcagagaacacagctgataacggaaaactatcaagttgtctgattgattatccttccgactttgtgattctatga |
50609601 |
T |
|
| Q |
284 |
cagttttgcttttacag |
300 |
Q |
| |
|
|||||||||||| |||| |
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|
| T |
50609600 |
cagttttgctttcacag |
50609584 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 310
Target Start/End: Complemental strand, 11910694 - 11910655
Alignment:
| Q |
271 |
tgagcttctatgacagttttgcttttacagccgtgtctct |
310 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||| |
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|
| T |
11910694 |
tgagcttctataacagttttgctcttacagccgtgtctct |
11910655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 197 - 299
Target Start/End: Complemental strand, 15436348 - 15436246
Alignment:
| Q |
197 |
ctcctaaatatgctcagagaacacaattgttaacagaaaactaccaagttgtgtgattgatttcctctcggctttgagcttctatgacagttttgctttt |
296 |
Q |
| |
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|||| ||||||| ||||||| ||| |||||||| |||||||||| |||||||||| ||| |||| ||| |||||||| ||| ||||||||||||||| | |
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|
| T |
15436348 |
ctcccaaatatgttcagagaccacgattgttaatagaaaactactaagttgtgtggttggtttcgtcttggctttgaaattccatgacagttttgcttat |
15436249 |
T |
|
| Q |
297 |
aca |
299 |
Q |
| |
|
||| |
|
|
| T |
15436248 |
aca |
15436246 |
T |
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