View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11016_low_25 (Length: 294)
Name: NF11016_low_25
Description: NF11016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11016_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 20 - 286
Target Start/End: Complemental strand, 33496117 - 33495851
Alignment:
| Q |
20 |
tccataaccgtctgttgtttgacaccagaatatggaaataacaacacccttatttgtattgatctactccaccctcatgattctgcccacgataattctc |
119 |
Q |
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| T |
33496117 |
tccataaccgtctgttgtttgacaccagaatatggaaataacaacacccttatttgtattgatctactccaccctcatgattctgcccacaataattctc |
33496018 |
T |
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| Q |
120 |
tttggatgaatatctagaatcttgatattcctcaccgtgttcgagcctttatatggcatttagctcatcattgcttgcccgcccatgtcaatcttaatgc |
219 |
Q |
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||||||||||||||| || ||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||| |||||||||||||| |
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| T |
33496017 |
tttggatgaatatctggactctcgatattcctcaccgtgttcgagcctttatgtggcatttagctcatcatttcttgcccacccgtgtcaatcttaatgt |
33495918 |
T |
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| Q |
220 |
aagaggaattcagtgcgaggaatcatgcgttatgtgtgaaacttttgcggaatcccacattcatctc |
286 |
Q |
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| T |
33495917 |
aagaggaattcagtgcgaggaatcatgcgttatgtgtgaaacttttgcggaatcccacattaatctc |
33495851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 71 - 286
Target Start/End: Original strand, 4243510 - 4243725
Alignment:
| Q |
71 |
atttgtattgatctactccaccctcatgattctgcccacgataattctctttggatgaatatctagaatcttgatattcctcaccgtgttcgagccttta |
170 |
Q |
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| T |
4243510 |
atttgtagtgatctactccaccctcatgattctgcccacaataattcttcatggatgaatatctggaatctcaatattcctcaccgtgtccgagcctttc |
4243609 |
T |
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| Q |
171 |
tatggcatttagctcatcattgcttgcccgcccatgtcaatcttaatgcaagaggaattcagtgcgaggaatcatgcgttatgtgtgaaacttttgcgga |
270 |
Q |
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| T |
4243610 |
tatggcgtttagctcataattgcttgcccactcgtgtcaatcttaatgcaagaggaatccagtgcgaggaatcatgtgttatgtttgaaaattttgcgga |
4243709 |
T |
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| Q |
271 |
atcccacattcatctc |
286 |
Q |
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| T |
4243710 |
atgccacactcatctc |
4243725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 4243432 - 4243467
Alignment:
| Q |
22 |
cataaccgtctgttgtttgacaccagaatatggaaa |
57 |
Q |
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| T |
4243432 |
cataaccgtctgttgtctgacaccagaatatggaaa |
4243467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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