View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11016_low_27 (Length: 282)
Name: NF11016_low_27
Description: NF11016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11016_low_27 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 24809608 - 24809338
Alignment:
| Q |
1 |
ctccctccctcttgaccatagcagacctacgaagcacaaacacagacaccaa-acac-gacatggatactgataatttgagaaaaccacgtaatctatca |
98 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||| |||||||| ||||| | || | ||||| | || ||||||||| ||||||||||||||||||| |
|
|
| T |
24809608 |
ctccctccctcttgaccatagcatacctatgaagaacaaacacggacactgatacgccgacatcgcta---ataatttgaaaaaaccacgtaatctatca |
24809512 |
T |
|
| Q |
99 |
aatttgatcctagctaacatgtttgaatgatatacaacagatggaaacaaatgaaggaagataggatgtccttttttccctcagctcggttagtgaatgg |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24809511 |
aatttgatcctagctaacatgtttgaatgatatacaacagatggaaacaaatgaaggaagataggatgtccttttttccctcagctcggttagtgaatgg |
24809412 |
T |
|
| Q |
199 |
ctttgaaatttgtcttacaaagagacatgataataatcaaagaaactgaaacatatgtcaccatgttcatctca |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24809411 |
ctttgaaatttgtcttacaaagagacatgataataatcaaagaaactgaaacatatgtcaccatgttcatctca |
24809338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 155
Target Start/End: Complemental strand, 29946405 - 29946339
Alignment:
| Q |
89 |
taatctatcaaatttgatcctagctaacatgtttgaatgatatacaacagatggaaacaaatgaagg |
155 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| ||||||||||| |||| ||||| ||||||||| |
|
|
| T |
29946405 |
taatatatcaaatttgatcctacctaacatgtttaaatgatatacagcagacggaaataaatgaagg |
29946339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University