View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11016_low_28 (Length: 282)
Name: NF11016_low_28
Description: NF11016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11016_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 27986316 - 27986578
Alignment:
| Q |
1 |
ttccaactgattactccaccaagaggttccagaaaactgatcaccggaggaagtagttaagatcgaactcagtggcttctgttcttcatccgttaacgat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27986316 |
ttccaactgattactccaccaagaggttccagaaaactgatcaccggaggaagtagttaagatcgaactcagtggcttctgttcttcatcggttaacgat |
27986415 |
T |
|
| Q |
101 |
ggaatatcgtctacaacgccgaacgccgccgtaacttccgacgtagacagtggttttggcgcaaaagataacggcggggattgtagaatatattgcgccg |
200 |
Q |
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|||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27986416 |
ggaagatcgtcgataacgccgaacgccgccgtaacttccgacgtagacagtggttttggcgcaaaagataacggcggggattgtagaatatatcgcgccg |
27986515 |
T |
|
| Q |
201 |
cgatttctgcggcggttggtggtggtttgtttgaggtggtttgtggaggagaagatggagcat |
263 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
27986516 |
cgatttctgcggcggttggtggtggtttgtttgtggtggtttgtggaggagaagatggagcat |
27986578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 28043618 - 28043880
Alignment:
| Q |
1 |
ttccaactgattactccaccaagaggttccagaaaactgatcaccggaggaagtagttaagatcgaactcagtggcttctgttcttcatccgttaacgat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
28043618 |
ttccaactgattactccaccaagaggttccagaaaactgatcaccggaggaagtagttaagatcgaactcagtggcttctgttcttcatcggttaacgat |
28043717 |
T |
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| Q |
101 |
ggaatatcgtctacaacgccgaacgccgccgtaacttccgacgtagacagtggttttggcgcaaaagataacggcggggattgtagaatatattgcgccg |
200 |
Q |
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| T |
28043718 |
ggaagatcgtcgataacgccgaacgccgccgtaacttccgacgtagacagtggttttggcgcaaaagataacggcggggattgtagaatatatcgcgccg |
28043817 |
T |
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| Q |
201 |
cgatttctgcggcggttggtggtggtttgtttgaggtggtttgtggaggagaagatggagcat |
263 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28043818 |
cgatttctgcggcggttggtggtggtttgtttgtggtggtttgtggaggagaagatggagcat |
28043880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 263
Target Start/End: Original strand, 27241251 - 27241301
Alignment:
| Q |
213 |
cggttggtggtggtttgtttgaggtggtttgtggaggagaagatggagcat |
263 |
Q |
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| T |
27241251 |
cggttggtggtggtttgtttgaggtggtttgtggatgagaaggtggagcat |
27241301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 263
Target Start/End: Original strand, 27247124 - 27247174
Alignment:
| Q |
213 |
cggttggtggtggtttgtttgaggtggtttgtggaggagaagatggagcat |
263 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
27247124 |
cggttggtggtggtttgtttgaggtggtttgtggatgagaaggtggagcat |
27247174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 23890438 - 23890593
Alignment:
| Q |
1 |
ttccaactgattactccaccaagaggttccagaaaactgatcaccggaggaagtagttaagatcgaactcagtggcttctgttcttcatccgttaacgat |
100 |
Q |
| |
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||||||||||||| || |||||||||||||||||||| ||| |||||||||||| || ||||||||| ||||||||||| |||||||||| ||||||||| |
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| T |
23890438 |
ttccaactgattattctaccaagaggttccagaaaaccgataaccggaggaagttgtcaagatcgaagtcagtggcttcggttcttcatcggttaacgat |
23890537 |
T |
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| Q |
101 |
ggaatatcgtctacaacgccgaacgccgccgtaacttccgacgtagacagtggttttgg |
159 |
Q |
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|||| |||| || ||||||||||||||||| ||||||||||| | |||| ||||||| |
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| T |
23890538 |
ggaagatcg---acgacgccgaacgccgccgtgacttccgacgtcgtcagttgttttgg |
23890593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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