View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11016_low_29 (Length: 270)
Name: NF11016_low_29
Description: NF11016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11016_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 22 - 260
Target Start/End: Original strand, 40076905 - 40077143
Alignment:
| Q |
22 |
acgagaagcgtaaagaatggctacttcaccatccttcattcgtggtcggagcaagcgaaaagatacttgttataaccggttcacaacctacaaagtgtga |
121 |
Q |
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| T |
40076905 |
acgagaagcgtaaagaatggctacttcaccatccttcattcgtggtcggagcaagcgaaaagatacttgttataacgggttcacaacctacaaagtgtga |
40077004 |
T |
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| Q |
122 |
caacccgattggcgaccaccttttactgcggttctttaaaaacaaggttgattattgtcgtatacacaaccacgacataatctacaacaatgcattgttg |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40077005 |
caacccgattggcgaccaccttttactgcggttctttaaaaacaaggttgattattgtcgtatacacaaccacgacataatctacaacaatgcattgttg |
40077104 |
T |
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| Q |
222 |
cacccaaaaatggacacttattgggccaagtatcctatg |
260 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |
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| T |
40077105 |
gacccgaaaatggacacttattgggccaagtatcctatg |
40077143 |
T |
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