View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11016_low_3 (Length: 623)
Name: NF11016_low_3
Description: NF11016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11016_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 93 - 612
Target Start/End: Complemental strand, 20016285 - 20015766
Alignment:
| Q |
93 |
aaatcccttatcacttctcaaactgacgaagcttggaaatctttcaaaacccttacaactcatcattccttcccacctaaacccctcactaattcccttc |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
20016285 |
aaatcccttatcacttctcaaactgacgaagcttggaaatctttcaaaaccctaacaactcatcattccttcccacccaaacccctcactaattcccttc |
20016186 |
T |
|
| Q |
193 |
tcactcacttatcctctcttcccaacaacattctcaatctcaaaagagcttttgcttcaaccctctttctcatccaaaaataccccaatctccttgaatt |
292 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||| ||||| ||||| |
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|
| T |
20016185 |
tcacccacttatcctctcttcctgacaacattctcaatctcaaaagagctttcgcttcaaccctctttctcattcaaaaacaccccaacctcctcgaatt |
20016086 |
T |
|
| Q |
293 |
caatactattcataccatccttctttctatgaaatctgccaacactgctccccctgctttttcacttgttaaatccatgttcaaaaatcggttttttatc |
392 |
Q |
| |
|
|||||| |||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||| | ||| ||||||||| |||| ||||| || |
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| T |
20016085 |
caatacaattcatgccatccttctttccattaaatctgccaacactgctccccctgctttttcacttgtcagatcaatgttcaaatatcgttttttcatt |
20015986 |
T |
|
| Q |
393 |
ccttttcattcgtggggcggcgtgctcgttgatattgctcgaaacaatgacaaccttgctgcctttttacctctttttgaagagaactgcagggttgctt |
492 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
20015985 |
ccttttcatttgtggggcggcgtgctcgttgatattgctagaaacaatgacaaccttgctgcctttttacctctttttgaagaaaactgcagggttgctt |
20015886 |
T |
|
| Q |
493 |
tcgatgagaaactggagtttatgatacctgatgtttcttcttgtaatgctgctcttgaagcctgctgttttttccttcaatcggtaactgatgctaacag |
592 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
20015885 |
tcgatgagaaactggagtttatgatacctgatgttgcttcttgtaatgctgctcttgaagcctgctgtttttgccttcaatcggtaactgatgctaacag |
20015786 |
T |
|
| Q |
593 |
agttgttgaaatgatgtcca |
612 |
Q |
| |
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|||||||||||| ||||||| |
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| T |
20015785 |
agttgttgaaattatgtcca |
20015766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 93 - 612
Target Start/End: Original strand, 19700330 - 19700849
Alignment:
| Q |
93 |
aaatcccttatcacttctcaaactgacgaagcttggaaatctttcaaaacccttacaactcatcattccttcccacctaaacccctcactaattcccttc |
192 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19700330 |
aaatcccttatcacttctcaaaccgacgaagcttggaaatctttcaaaaccctaacaacccatcattccttcccacctaaacccctcactaattcccttc |
19700429 |
T |
|
| Q |
193 |
tcactcacttatcctctcttcccaacaacattctcaatctcaaaagagcttttgcttcaaccctctttctcatccaaaaataccccaatctccttgaatt |
292 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||| ||||| ||||| |
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|
| T |
19700430 |
tcacccacttatcctctcttcctgacaacattctcaatctcaaaagagctttcgcttcaaccctctttctcattcaaaaacaccccaacctcctcgaatt |
19700529 |
T |
|
| Q |
293 |
caatactattcataccatccttctttctatgaaatctgccaacactgctccccctgctttttcacttgttaaatccatgttcaaaaatcggttttttatc |
392 |
Q |
| |
|
|||||| |||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||| | ||| ||||||||| |||| ||||| || |
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|
| T |
19700530 |
caatacaattcatgccatccttctttccattaaatctgccaacactgctccccctgctttttcacttgtcagatcaatgttcaaatatcgttttttcatt |
19700629 |
T |
|
| Q |
393 |
ccttttcattcgtggggcggcgtgctcgttgatattgctcgaaacaatgacaaccttgctgcctttttacctctttttgaagagaactgcagggttgctt |
492 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
19700630 |
ccttttcatttgtggggcggcgtgctcgttgatattgctagaaacaatgacaaccttgctgcctttttacctctttttgaagaaaactgcagggttgctt |
19700729 |
T |
|
| Q |
493 |
tcgatgagaaactggagtttatgatacctgatgtttcttcttgtaatgctgctcttgaagcctgctgttttttccttcaatcggtaactgatgctaacag |
592 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
19700730 |
tcgatgagaaactggagtttatgatacctgatgttgcttcttgtaatgctgctcttgaagcctgctgtttttgccttcaatcggtaactgatgctaacag |
19700829 |
T |
|
| Q |
593 |
agttgttgaaatgatgtcca |
612 |
Q |
| |
|
|||||||||||| ||||||| |
|
|
| T |
19700830 |
agttgttgaaattatgtcca |
19700849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 393 - 556
Target Start/End: Original strand, 24464765 - 24464928
Alignment:
| Q |
393 |
ccttttcattcgtggggcggcgtgctcgttgatattgctcgaaacaatgacaaccttgctgcctttttacctctttttgaagagaactgcagggttgctt |
492 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24464765 |
ccttttcattcgtggggcggcgtgctcgttgatattgctagaaacaatgacaaccttgctgcctttttacctctttttgaagagaactgcagggttgctt |
24464864 |
T |
|
| Q |
493 |
tcgatgagaaactggagtttatgatacctgatgtttcttcttgtaatgctgctcttgaagcctg |
556 |
Q |
| |
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||||||| || ||||| ||||||||||||||||||||| ||||||||||||||||| ||||||| |
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|
| T |
24464865 |
tcgatgacaagctggactttatgatacctgatgtttctgcttgtaatgctgctcttcaagcctg |
24464928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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