View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11016_low_30 (Length: 261)

Name: NF11016_low_30
Description: NF11016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11016_low_30
NF11016_low_30
[»] chr5 (10 HSPs)
chr5 (20-243)||(13447078-13447301)
chr5 (20-243)||(13419527-13419750)
chr5 (20-243)||(13426418-13426641)
chr5 (21-238)||(13413183-13413400)
chr5 (19-243)||(13388997-13389221)
chr5 (131-243)||(13385176-13385288)
chr5 (132-241)||(13454143-13454252)
chr5 (24-78)||(13454035-13454089)
chr5 (19-85)||(13393562-13393628)
chr5 (170-243)||(13393404-13393477)
[»] chr4 (2 HSPs)
chr4 (19-98)||(47601348-47601427)
chr4 (201-241)||(47601530-47601570)


Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 13447078 - 13447301
Alignment:
Q  20 atcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagacttaccattgaatgtttga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447078 atcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagacttaccattgaatgtttga 13447177  T
Q  120 gtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaa 219  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447178 gtatatttggtgcagtaattctcaatatcgtcggcacaattttcgcaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaa 13447277  T
Q  220 acttttttactttgcttcccacct 243  Q
    ||||||||||||||||||||||||    
T  13447278 acttttttactttgcttcccacct 13447301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 13419527 - 13419750
Alignment:
Q  20 atcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagacttaccattgaatgtttga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||  |||||||||||| ||||  ||    ||||        
T  13419527 atcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccatatgtgacggtgccatcacgatactttgcaccacatgtgact 13419626  T
Q  120 gtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaa 219  Q
    ||| || | | |||||||||||||| |||||| ||||||||||  || ||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  13419627 gtaaatgttgggcagtaattctcaagatcgtcagcacaattttggcatgaacgacatgaatcaaccatgtatcccacaccaactttgtctccaactttaa 13419726  T
Q  220 acttttttactttgcttcccacct 243  Q
    |||||| |||||||||||| ||||    
T  13419727 acttttctactttgcttccaacct 13419750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 13426418 - 13426641
Alignment:
Q  20 atcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagacttaccattgaatgtttga 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||| ||||   ||||||||||| ||||| ||    ||||        
T  13426418 atcaggaatgcgaatcacaaagtgctcatctgcaaccattgagtcggaataacctccatatgtgacgctgccatcacgatacttagcaccacatgtaact 13426517  T
Q  120 gtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaa 219  Q
    || | || || |||||||||||||| ||| || ||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  13426518 gtttgttgggggcagtaattctcaagatcttccgcacaattttcgcatgaacgacatgaatcaaccatgtatcccactcctactttgtctccaactttaa 13426617  T
Q  220 acttttttactttgcttcccacct 243  Q
    |||||| |||||||||||| ||||    
T  13426618 acttttctactttgcttccaacct 13426641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 238
Target Start/End: Original strand, 13413183 - 13413400
Alignment:
Q  21 tcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagacttaccattgaatgtttgag 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||  || ||||||||| ||||  ||    ||||         
T  13413183 tcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccataagtgacggttccatcacgatacttggcaccacatgtgacta 13413282  T
Q  121 tatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaa 220  Q
     | |||||| |||||||||||||| || |||   ||||| ||  || || ||||||||||||| || ||| || || |||||||||||||||||||||||    
T  13413283 caaatttggggcagtaattctcaagattgtcattacaatcttggcatgatcgacatgaatcaatcaagtagccaacacctactttgtctccaactttaaa 13413382  T
Q  221 cttttttactttgcttcc 238  Q
    ||| |  |||||||||||    
T  13413383 cttctccactttgcttcc 13413400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 13389221 - 13388997
Alignment:
Q  19 catcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagacttaccattgaatgtttg 118  Q
    ||||||||||| ||| ||| |||| ||| |||||||||| |||||| ||  |||||||||| ||| | || ||||| ||| ||||  ||    ||||       
T  13389221 catcaggaatgtgaaccacgaagttctcatctgcaaccaatgagtcagaataacctccatatgtgctcgttccatcgcgatacttggcaccacatgtgaa 13389122  T
Q  119 agtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaacttta 218  Q
    |||| || |||  |||||||| |||| || |||  ||||||||| ||| || |||||||||||||||||||| || || ||||||||||||||||| ||     
T  13389121 agtaaatgtgggacagtaattttcaagattgtcaacacaattttgacatgatcgacatgaatcaaccatgtagccaacacctactttgtctccaacattg 13389022  T
Q  219 aacttttttactttgcttcccacct 243  Q
    ||||||| |||||||||||||||||    
T  13389021 aacttttctactttgcttcccacct 13388997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 243
Target Start/End: Complemental strand, 13385288 - 13385176
Alignment:
Q  131 gcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttact 230  Q
    ||||||||| |||| || |||  ||||||||| ||| || |||||||||||||  ||||| || || ||||||||||||||||| || ||||||| ||||    
T  13385288 gcagtaattttcaagattgtcaacacaattttgacacgatcgacatgaatcaattatgtagccaacacctactttgtctccaacattgaacttttctact 13385189  T
Q  231 ttgcttcccacct 243  Q
    |||||||||||||    
T  13385188 ttgcttcccacct 13385176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 13454143 - 13454252
Alignment:
Q  132 cagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttactt 231  Q
    ||||||||||||| ||  ||  ||||||||| ||| ||  |||| |||||||||| | ||||||| |||||| ||||||||||||| |||||||| ||||    
T  13454143 cagtaattctcaagattatcaacacaattttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttcactt 13454242  T
Q  232 tgcttcccac 241  Q
    ||||||||||    
T  13454243 tgcttcccac 13454252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 13454035 - 13454089
Alignment:
Q  24 ggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccat 78  Q
    |||||||||| ||||||||||||||| | |||||||||||| ||||| |||||||    
T  13454035 ggaatgcgaaacacaaagtgctcgtcggaaaccattgagtcagagaagcctccat 13454089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 13393628 - 13393562
Alignment:
Q  19 catcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgat 85  Q
    ||||||||||| |||  | ||||||||| ||||||||||||||||| ||| | |||||||| |||||    
T  13393628 catcaggaatgtgaactataaagtgctcatctgcaaccattgagtcagagtaccctccatatgtgat 13393562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 243
Target Start/End: Complemental strand, 13393477 - 13393404
Alignment:
Q  170 acgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttactttgcttcccacct 243  Q
    |||||| |||||||| | | ||||||| || ||||||||||||| ||| ||||| | |||||||||||| ||||    
T  13393477 acgacacgaatcaactaagcatcccacacccactttgtctccaattttgaacttctctactttgcttcctacct 13393404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 47601348 - 47601427
Alignment:
Q  19 catcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacga 98  Q
    |||| |||||| ||| |||||||||||||||| ||||||||||||| ||| ||||||| || ||| | ||||||||||||    
T  47601348 catcgggaatgtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctccgtatgtggtggtgccatcacga 47601427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 47601530 - 47601570
Alignment:
Q  201 actttgtctccaactttaaacttttttactttgcttcccac 241  Q
    ||||||||||||||||| ||||||| |||||||||||||||    
T  47601530 actttgtctccaactttgaacttttctactttgcttcccac 47601570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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