View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11016_low_33 (Length: 247)
Name: NF11016_low_33
Description: NF11016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11016_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 30 - 244
Target Start/End: Original strand, 46930247 - 46930460
Alignment:
| Q |
30 |
aatctagagagttgatcactgatttgcatgatatcttgtgtgtgtttgatttttggcctacttgttttttgtctataaagctgcttatgactcactactc |
129 |
Q |
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| T |
46930247 |
aatctagagagttgatcactgatttgcatgatatcttgtgtgtgtttgatttttggcctacttgttttttgtctataaagctgcttatgactcactactc |
46930346 |
T |
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| Q |
130 |
tttgtatggtaaatcggtcaccttcctggcttttatacaattgttgctgctatgcatatagtagtaactattagggatacacaaatttaaacttagtaca |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
46930347 |
tttgtatggtaaatcggtcaccttcctggcttttatacaattgttgctgctatgcatatagtagtaactattagggatacacaaatttaaactta-tgca |
46930445 |
T |
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| Q |
230 |
ttaattgttcatgaa |
244 |
Q |
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||||||||||||||| |
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| T |
46930446 |
ttaattgttcatgaa |
46930460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 30 - 247
Target Start/End: Original strand, 47167465 - 47167679
Alignment:
| Q |
30 |
aatctagagagttgatcactgatttgcatgatatcttgtgtgtgtttgatttttggcctacttgttttttgtctataaagctgcttatgactcactactc |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47167465 |
aatctagagagttgatcactgatttgcatgatatcttgtgtgtgtttgatttttgccctacttgttttttgtctataaagctgcttatgactcactactc |
47167564 |
T |
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| Q |
130 |
tttgtatggtaaatcggtcaccttcctggcttttatacaattgttgctgctatgcatatagtagtaactattagggatacacaaatttaaacttagtaca |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||| ||||||||| |||||||||||||||||| |
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| T |
47167565 |
tttgtatggtaaatcggtcaccttcctggcttttatacaactgttgctgctatgcata---tagtatctatcagggatacagaaatttaaacttagtaca |
47167661 |
T |
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| Q |
230 |
ttaattgttcatgaattt |
247 |
Q |
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| T |
47167662 |
tcaattgttcataaattt |
47167679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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