View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11016_low_38 (Length: 237)
Name: NF11016_low_38
Description: NF11016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11016_low_38 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 50240343 - 50240128
Alignment:
| Q |
1 |
caagtttttggaaccaagtttgagtaggaaaagtggtccataagtttgtgacatggatgcaagcatacgatgattgagatcattgccaacttgaagccag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50240343 |
caagtttttggaaccaagtttgagtaggaaaagtggtccataagtttgtgacatggatgcaagcatacgatgattgagatcattgccaacttgaagccag |
50240244 |
T |
|
| Q |
101 |
tttccaaatataggaacagaaaaagggcttggaggtgaagaatttttcttatggctgtttgaattggaattagttaggtatataaaccataataataatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50240243 |
tttccaaatataggaacagaaaaagggcttggaggtgaagaatttttcttatggctgtttgaattggaattagttaggtatataaaccataataataatg |
50240144 |
T |
|
| Q |
201 |
tgatgaaagtggcaca |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
50240143 |
tgatgaaagtggcaca |
50240128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University