View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11016_low_39 (Length: 230)
Name: NF11016_low_39
Description: NF11016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11016_low_39 |
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| [»] scaffold0428 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 34 - 227
Target Start/End: Complemental strand, 33387343 - 33387150
Alignment:
| Q |
34 |
ccttgattttgttggcagaagtgagactatgtttgtttgattttcaatttatactgaattttataatttgcggtgtggatgtgccgtttggtgggggttt |
133 |
Q |
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| T |
33387343 |
ccttgattttgttggcagaagtgagactatgtttgtttgattttcaatttatactgaattttataatttgcggtgtggatgtgccgtttggtgggggttt |
33387244 |
T |
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| Q |
134 |
taaatttgtgttaggttgtaatctccgtgtcgttttcgatttctgtgtctgtgtttcatagacaacaacaattttaggaacactttatcactga |
227 |
Q |
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| T |
33387243 |
taaatttgtgttaggttgtaatctccgtgtcgttttcgatttctgtgtctgtgtttcatagacaacaacaattttaggaacactttatcactga |
33387150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 33283727 - 33283675
Alignment:
| Q |
178 |
gtgtctgtgtttcatagacaacaacaattttaggaacactttatcactgaaat |
230 |
Q |
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| T |
33283727 |
gtgtctgtgtttcatagacaacaacattttaaggaacactatatcactgaaat |
33283675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 33261701 - 33261640
Alignment:
| Q |
142 |
tgttaggttgtaatctccgtgtcgttttcgatttctgtgtctgtgtttcatagacaacaaca |
203 |
Q |
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| T |
33261701 |
tgttaggttgtaatttctttgccgttttcggtgtctgtgtctgtgtttcatagacaacaaca |
33261640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 33261788 - 33261714
Alignment:
| Q |
37 |
tgattttgttggcagaagtgagactatgtttgtttgattttcaatttatactgaattttataatttgcggtgtgg |
111 |
Q |
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| T |
33261788 |
tgattttgttggcagaagtgacactttctttgtctgacttgcattttagactgaattttataatttacggggtgg |
33261714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 162
Target Start/End: Complemental strand, 33282109 - 33282071
Alignment:
| Q |
124 |
gtgggggttttaaatttgtgttaggttgtaatctccgtg |
162 |
Q |
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| T |
33282109 |
gtgggggttttaaatttgtgttaggttgtaatttccgtg |
33282071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 33283844 - 33283770
Alignment:
| Q |
37 |
tgattttgttggcagaagtgagactatgtttgtttgattttcaatttatactgaattttataatttgcggtgtgg |
111 |
Q |
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| T |
33283844 |
tgattttgttggcagaagtgacactttctttgtctgacttgcattttagactgaattttataatttacggggtgg |
33283770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 33358135 - 33358066
Alignment:
| Q |
37 |
tgattttgttggcagaagtgagactatgtttgtttgattttcaatttatactgaattttataatttgcgg |
106 |
Q |
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| T |
33358135 |
tgattttgttggcagaagtgcgacttactttttctgctttgcattttagactgaattttataatttgcgg |
33358066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 17441685 - 17441759
Alignment:
| Q |
37 |
tgattttgttggcagaagtgagactatgtttgtttgattttcaatttatactgaattttataatttgcggtgtgg |
111 |
Q |
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| T |
17441685 |
tgattttgttggcacaagtgagactttgtttgtctgatttgcattttagactgaattttataatttgcggggtgg |
17441759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 17441816 - 17441861
Alignment:
| Q |
185 |
tgtttcatagacaacaacaattttaggaacactttatcactgaaat |
230 |
Q |
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| T |
17441816 |
tgtttcatagacaacaatattttaaggaacactttatcactgaaat |
17441861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 5490 - 5438
Alignment:
| Q |
178 |
gtgtctgtgtttcatagacaacaacaattttaggaacactttatcactgaaat |
230 |
Q |
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| T |
5490 |
gtgtctgtgtttcatagacaacaacattttaaggaacactatatcactgaaat |
5438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 162
Target Start/End: Original strand, 12143 - 12181
Alignment:
| Q |
124 |
gtgggggttttaaatttgtgttaggttgtaatctccgtg |
162 |
Q |
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| T |
12143 |
gtgggggttttaaatttgtgttaggttgtaatttccgtg |
12181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 5607 - 5533
Alignment:
| Q |
37 |
tgattttgttggcagaagtgagactatgtttgtttgattttcaatttatactgaattttataatttgcggtgtgg |
111 |
Q |
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| T |
5607 |
tgattttgttggcagaagtcacactttctttgtctgacttgcattttagactgaattttataatttacggggtgg |
5533 |
T |
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