View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11016_low_4 (Length: 590)
Name: NF11016_low_4
Description: NF11016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11016_low_4 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 18 - 578
Target Start/End: Complemental strand, 29322038 - 29321476
Alignment:
| Q |
18 |
taaactattctagtggagacatgtttactcttttaaggtggcatgtaggatgagggttaaattacatccttcattagtcgaatgcataaatcatacatgt |
117 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | | ||||||||||||||||||||| |
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| T |
29322038 |
taaactattatagtggagacatgtttactcttttaaggtggcatgtagggtgagggttaaattacatccttcatcaatggaatgcataaatcatacatgt |
29321939 |
T |
|
| Q |
118 |
agaattaatcaatagcctagatttgttagaaataaattgtaccatctacaacatgttgagcaacatccgttagagacttatgaagaattgatagtggtat |
217 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29321938 |
agaattagtcaatagcctagatttgttagaaataaattgtaccatctacaacatgctgagcaacatccgttagagacttatgaagaattgatagtggtat |
29321839 |
T |
|
| Q |
218 |
gacaggaggaatcaaaattcaaaatagattatggtaaggaaatccacagcttatagaaggaaagcacaacatagaggttatgcccctacattcaagttgt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29321838 |
gacaggaggaatcaaaattcaaaatagattatggtaaggaaatccacaacttatagaaggaaagcacaacatagaggttatgcccctacattcaagttgt |
29321739 |
T |
|
| Q |
318 |
tgatcataagttgtttaacaataacattattgtttattgttatatgcttcttgc-nnnnnnnnnactgataaatatgtgctattacctttgcctctctca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||| |||||||||||||| ||||| |
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| T |
29321738 |
tgatcataagttgtttaacaataacattattgtttattgttatatgcttcttgctatttttttaattgataaacatgtgatattacctttgcctttctca |
29321639 |
T |
|
| Q |
417 |
gcttaagaggtttgatcgatggtgatgacgagtctgatctattgctttgaaccaaccttttgaaactacgcac-ttacctcatggaattcgatacaacca |
515 |
Q |
| |
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|||||| |||| |||| ||||||||||||||||||||||| |||||| |||| ||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29321638 |
gcttaataggtctgatagatggtgatgacgagtctgatctgttgcttcgaactaacattttgaaactacgcactttacctcatggaattcgatacaacca |
29321539 |
T |
|
| Q |
516 |
atgtaagtcatattgccttattgtgaaacatcgaaactttatttttgattggttattgatctc |
578 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29321538 |
atgtaagtcatattgccttattgtgaaacatcgaaactttatttttgattggttattgatctc |
29321476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 148; Significance: 8e-78; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 383 - 578
Target Start/End: Original strand, 14704958 - 14705153
Alignment:
| Q |
383 |
tgataaatatgtgctattacctttgcctctctcagcttaagaggtttgatcgatggtgatgacgagtctgatctattgctttgaaccaaccttttgaaac |
482 |
Q |
| |
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||||||| ||||| |||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||| |||||| |||| ||||||||||||| |
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| T |
14704958 |
tgataaacatgtgatattacctttgcctttctcagcttaataggtctgatcgatggtgatgacgagtctgatctgttgcttcgaactaaccttttgaaac |
14705057 |
T |
|
| Q |
483 |
tacgcacttacctcatggaattcgatacaaccaatgtaagtcatattgccttattgtgaaacatcgaaactttatttttgattggttattgatctc |
578 |
Q |
| |
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||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
14705058 |
tacgcacttgcctcatagaattcaatacaaccaatgtaagtcatattgccttattgtgaaacatcgaaactttctttttgattggttattgatctc |
14705153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 148; Significance: 8e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 383 - 578
Target Start/End: Complemental strand, 46229201 - 46229006
Alignment:
| Q |
383 |
tgataaatatgtgctattacctttgcctctctcagcttaagaggtttgatcgatggtgatgacgagtctgatctattgctttgaaccaaccttttgaaac |
482 |
Q |
| |
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||||||| ||||| |||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||| |||||| |||| ||||||||||||| |
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| T |
46229201 |
tgataaacatgtgatattacctttgcctttctcagcttaataggtctgatcgatggtgatgacgagtctgatctgttgcttcgaactaaccttttgaaac |
46229102 |
T |
|
| Q |
483 |
tacgcacttacctcatggaattcgatacaaccaatgtaagtcatattgccttattgtgaaacatcgaaactttatttttgattggttattgatctc |
578 |
Q |
| |
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||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
46229101 |
tacgcacttgcctcatagaattcaatacaaccaatgtaagtcatattgccttattgtgaaacatcgaaactttctttttgattggttattgatctc |
46229006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 148; Significance: 8e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 383 - 578
Target Start/End: Original strand, 3506214 - 3506409
Alignment:
| Q |
383 |
tgataaatatgtgctattacctttgcctctctcagcttaagaggtttgatcgatggtgatgacgagtctgatctattgctttgaaccaaccttttgaaac |
482 |
Q |
| |
|
||||||| ||||| |||||||||||||| ||||||||||| |||| ||||||||| |||| ||||||||||||| |||||| |||| ||||||||||||| |
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| T |
3506214 |
tgataaacatgtgatattacctttgcctttctcagcttaataggtctgatcgatgttgattacgagtctgatctgttgcttcgaactaaccttttgaaac |
3506313 |
T |
|
| Q |
483 |
tacgcacttacctcatggaattcgatacaaccaatgtaagtcatattgccttattgtgaaacatcgaaactttatttttgattggttattgatctc |
578 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3506314 |
tatgcacttacctcatggaattcgatacaaccaatgtaagtcatattgccttattgtgaaacatcgaaactttctttttgattggttattgatctc |
3506409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 470 - 575
Target Start/End: Complemental strand, 1125375 - 1125270
Alignment:
| Q |
470 |
aaccttttgaaactacgcacttacctcatggaattcgatacaaccaatgtaagtcatattgccttattgtgaaacatcgaaactttatttttgattggtt |
569 |
Q |
| |
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||||||||||||||||||||||||| |||| | ||||||||| ||||| |||||||||||| | |||| ||||||||| ||||||| ||| || |||| | |
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| T |
1125375 |
aaccttttgaaactacgcacttaccacatgaatttcgatacagccaatctaagtcatattggcctattatgaaacatcaaaactttctttatgtttggct |
1125276 |
T |
|
| Q |
570 |
attgat |
575 |
Q |
| |
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|||||| |
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|
| T |
1125275 |
attgat |
1125270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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