View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11016_low_40 (Length: 225)

Name: NF11016_low_40
Description: NF11016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11016_low_40
NF11016_low_40
[»] chr2 (14 HSPs)
chr2 (13-225)||(30187171-30187383)
chr2 (13-221)||(30168578-30168786)
chr2 (13-224)||(30065591-30065802)
chr2 (16-224)||(30787656-30787864)
chr2 (13-224)||(30009094-30009305)
chr2 (13-224)||(30221118-30221329)
chr2 (13-224)||(30249303-30249514)
chr2 (80-224)||(30020440-30020584)
chr2 (80-224)||(30121288-30121432)
chr2 (25-224)||(30276915-30277114)
chr2 (80-224)||(30103059-30103203)
chr2 (47-224)||(30040111-30040288)
chr2 (47-224)||(30109589-30109766)
chr2 (47-224)||(30234249-30234426)


Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 30187383 - 30187171
Alignment:
Q  13 agcaaaggcgtggccatggatggtattatttcaattgctgctaaaattgctgagtatatggttgtacctattggtcgtcaatttggttacatactctact 112  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30187383 agcaaaggcgtggccatggatggtattatttcagttgctgctaaaattgctgagtatatggttgtacctattggtcgtcaatttggttacatactctact 30187284  T
Q  113 acaaggacaactttcaaaggatggaaactgatgtccaaaagctagaaggaacaaaagatagtgtgcaacgcaaagttgacgaggctagaaataatggaga 212  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30187283 acaaggacaaccttcaaaggatggaaactgatgtccaaaagctagaaggaacaaaagatagtgtgcaacgcaaagttgacgaggctagaaataatggaga 30187184  T
Q  213 agagattgaaaag 225  Q
    |||||||||||||    
T  30187183 agagattgaaaag 30187171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 30168578 - 30168786
Alignment:
Q  13 agcaaaggcgtggccatggatggtattatttcaattgctgctaaaattgctgagtatatggttgtacctattggtcgtcaatttggttacatactctact 112  Q
    |||||||| ||||||||||||| || ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30168578 agcaaaggggtggccatggatgctactatttctgttgctgctaaaattgctgagtatatggttgtacctattggtcgtcaatttggttacatactctact 30168677  T
Q  113 acaaggacaactttcaaaggatggaaactgatgtccaaaagctagaaggaacaaaagatagtgtgcaacgcaaagttgacgaggctagaaataatggaga 212  Q
    |||||   ||| || |||||||| ||||| ||||||||||||| || |||||||||| ||||||||||| ||  ||||| ||||||||||  || |||||    
T  30168678 acaagcgaaaccttgaaaggatgaaaactaatgtccaaaagctggagggaacaaaagctagtgtgcaacacactgttgatgaggctagaagcaacggaga 30168777  T
Q  213 agagattga 221  Q
    |||||||||    
T  30168778 agagattga 30168786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 30065591 - 30065802
Alignment:
Q  13 agcaaaggcgtggccatggatggtattatttcaattgctgctaaaattgctgagtatatggttgtacctattggtcgtcaatttggttacatactctact 112  Q
    |||||||| ||||||||||||| |||||||||||||||||||||| |||||||   |||||||| ||||||||| ||||||||| |||||||||||||||    
T  30065591 agcaaaggggtggccatggatgttattatttcaattgctgctaaatttgctgaaattatggttgcacctattggacgtcaatttcgttacatactctact 30065690  T
Q  113 acaaggacaactttcaaaggatggaaactgatgtccaaaagctagaaggaacaaaagatagtgtgcaacgcaaagttgacgaggctagaaataatggaga 212  Q
    |||||||| || || ||| |||| ||||||||||||||||| | || |||| |||| | |||||||||| ||  ||||| ||||||||||  || |||||    
T  30065691 acaaggactaccttaaaaagatgaaaactgatgtccaaaagatggagggaataaaaaacagtgtgcaacacactgttgatgaggctagaaggaacggaga 30065790  T
Q  213 agagattgaaaa 224  Q
    ||||||||||||    
T  30065791 agagattgaaaa 30065802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 30787656 - 30787864
Alignment:
Q  16 aaaggcgtggccatggatggtattatttcaattgctgctaaaattgctgagtatatggttgtacctattggtcgtcaatttggttacatactctactaca 115  Q
    ||||| ||||||||||||| |||| ||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  30787656 aaaggagtggccatggatgttattttttcagttgctgctaaaattgctgagtatatgtttgtacctattggacgtcaatttggttacatactctactaca 30787755  T
Q  116 aggacaactttcaaaggatggaaactgatgtccaaaagctagaaggaacaaaagatagtgtgcaacgcaaagttgacgaggctagaaataatggagaaga 215  Q
    ||| |||| || ||||||||  ||| || ||| ||||||| |||||| ||||||||||  |||||| ||  || ||  |||||||||  || ||||||||    
T  30787756 agggcaaccttgaaaggatgagaaccgaggtcaaaaagctggaaggatcaaaagatagcatgcaacacaccgtggataaggctagaaggaacggagaaga 30787855  T
Q  216 gattgaaaa 224  Q
    |||||||||    
T  30787856 gattgaaaa 30787864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 30009094 - 30009305
Alignment:
Q  13 agcaaaggcgtggccatggatggtattatttcaattgctgctaaaattgctgagtatatggttgtacctattggtcgtcaatttggttacatactctact 112  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||   |||||||| ||||||||| ||||||||| |||||||||||||||    
T  30009094 agcaaaggggtggccatggatgttattatttcaattgctgctaaaattgctgaaattatggttgcacctattggacgtcaatttcgttacatactctact 30009193  T
Q  113 acaaggacaactttcaaaggatggaaactgatgtccaaaagctagaaggaacaaaagatagtgtgcaacgcaaagttgacgaggctagaaataatggaga 212  Q
    |||||||| || || ||| |||| ||||||||||||| ||| | || ||||  ||| | |||||||||| ||  ||||| ||||||||||  || |||||    
T  30009194 acaaggactaccttaaaaagatgaaaactgatgtccagaagttggagggaattaaaaacagtgtgcaacacactgttgatgaggctagaaggaacggaga 30009293  T
Q  213 agagattgaaaa 224  Q
    ||||||||||||    
T  30009294 agagattgaaaa 30009305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 30221118 - 30221329
Alignment:
Q  13 agcaaaggcgtggccatggatggtattatttcaattgctgctaaaattgctgagtatatggttgtacctattggtcgtcaatttggttacatactctact 112  Q
    |||||||  ||||||||||||| |||||||||| |||||||||| ||| ||||||||| |||||||||||||||| ||||||||||||||||||| ||||    
T  30221118 agcaaagtggtggccatggatgttattatttcagttgctgctaagatttctgagtatacggttgtacctattggttgtcaatttggttacatactatact 30221217  T
Q  113 acaaggacaactttcaaaggatggaaactgatgtccaaaagctagaaggaacaaaagatagtgtgcaacgcaaagttgacgaggctagaaataatggaga 212  Q
    |||| |  ||| ||||||||||| ||| ||| ||||||||||| |||||| ||||||||  |||||| | ||  ||||| ||||||||||  || |||||    
T  30221218 acaaaggaaaccttcaaaggatgaaaattgaggtccaaaagctcgaaggatcaaaagatcatgtgcagcacagtgttgatgaggctagaaggaacggaga 30221317  T
Q  213 agagattgaaaa 224  Q
    ||||||||||||    
T  30221318 agagattgaaaa 30221329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 30249303 - 30249514
Alignment:
Q  13 agcaaaggcgtggccatggatggtattatttcaattgctgctaaaattgctgagtatatggttgtacctattggtcgtcaatttggttacatactctact 112  Q
    |||||||| ||||||||||||| ||||||| || ||||||||| | ||| |||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  30249303 agcaaaggagtggccatggatgttattattccagttgctgctacatttgttgagtatatgtttgtacctattggacgtcaatttggttacatactctact 30249402  T
Q  113 acaaggacaactttcaaaggatggaaactgatgtccaaaagctagaaggaacaaaagatagtgtgcaacgcaaagttgacgaggctagaaataatggaga 212  Q
    |||||   ||| || ||||||||  |||||| ||| |||| || |||||| |||||||||| ||||||| ||  ||||| ||||||||||  || ||  |    
T  30249403 acaagagaaaccttgaaaggatgagaactgaggtcaaaaatctggaaggatcaaaagatagcgtgcaacacaccgttgatgaggctagaaggaacgggca 30249502  T
Q  213 agagattgaaaa 224  Q
    ||||||||||||    
T  30249503 agagattgaaaa 30249514  T

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Target: chr2; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 80 - 224
Target Start/End: Original strand, 30020440 - 30020584
Alignment:
Q  80 ctattggtcgtcaatttggttacatactctactacaaggacaactttcaaaggatggaaactgatgtccaaaagctagaaggaacaaaagatagtgtgca 179  Q
    ||||||||||||||||||||||||||||||| ||||||| |||| ||   | ||||  ||||||||||||| |  | || |||| |||||| | | ||||    
T  30020440 ctattggtcgtcaatttggttacatactctattacaagggcaaccttaccaagatgacaactgatgtccaacatttggagggaataaaagacattttgca 30020539  T
Q  180 acgcaaagttgacgaggctagaaataatggagaagagattgaaaa 224  Q
    || ||| ||||| ||||| ||||  || |||||||||||||||||    
T  30020540 acacaatgttgatgaggccagaaggaacggagaagagattgaaaa 30020584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 80 - 224
Target Start/End: Complemental strand, 30121432 - 30121288
Alignment:
Q  80 ctattggtcgtcaatttggttacatactctactacaaggacaactttcaaaggatggaaactgatgtccaaaagctagaaggaacaaaagatagtgtgca 179  Q
    ||||||||||||||||||||||||||||||| ||||||| |||| ||   | ||||  ||||||||||||| |  | || |||| |||||| | | ||||    
T  30121432 ctattggtcgtcaatttggttacatactctattacaagggcaaccttaccaagatgacaactgatgtccaacatttggagggaataaaagacattttgca 30121333  T
Q  180 acgcaaagttgacgaggctagaaataatggagaagagattgaaaa 224  Q
    || ||| ||||| ||||| ||||  || |||||||||||||||||    
T  30121332 acacaatgttgatgaggccagaaggaacggagaagagattgaaaa 30121288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 30276915 - 30277114
Alignment:
Q  25 gccatggatggtattatttcaattgctgctaaaattgctgagtatatggttgtacctattggtcgtcaatttggttacatactctactacaaggacaact 124  Q
    |||||||||  ||| ||||||||||| ||||||||| |||| | || ||||| ||||||||| |  ||||||||||||||| | || ||||||| ||||     
T  30276915 gccatggattctatcatttcaattgcagctaaaatttctgaatttacggttgcacctattggacaacaatttggttacataatatattacaagggcaacc 30277014  T
Q  125 ttcaaaggatggaaactgatgtccaaaagctagaaggaacaaaagatagtgtgcaacgcaaagttgacgaggctagaaataatggagaagagattgaaaa 224  Q
    ||  |||| ||  | | | | ||||||| || || |||  |||||| |||||||||| ||  ||||| |||||||||   ||||||||||||||||||||    
T  30277015 ttttaagggtgacagccgctatccaaaatctggagggattaaaagacagtgtgcaacacactgttgatgaggctagacggaatggagaagagattgaaaa 30277114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 224
Target Start/End: Complemental strand, 30103203 - 30103059
Alignment:
Q  80 ctattggtcgtcaatttggttacatactctactacaaggacaactttcaaaggatggaaactgatgtccaaaagctagaaggaacaaaagatagtgtgca 179  Q
    ||||||||||||||||||||||||||||||| ||||||| |||| ||   | ||||  ||||||||||||| |  | || |||| |||||| | | ||||    
T  30103203 ctattggtcgtcaatttggttacatactctattacaagggcaaccttaccaagatgacaactgatgtccaacatttggagggaataaaagacattttgca 30103104  T
Q  180 acgcaaagttgacgaggctagaaataatggagaagagattgaaaa 224  Q
    || ||| ||||| ||||| ||||  || || ||||||||||||||    
T  30103103 acacaatgttgatgaggccagaaggaacggtgaagagattgaaaa 30103059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 224
Target Start/End: Complemental strand, 30040288 - 30040111
Alignment:
Q  47 ttgctgctaaaattgctgagtatatggttgtacctattggtcgtcaatttggttacatactctactacaaggacaactttcaaaggatggaaactgatgt 146  Q
    ||||| |||||| ||| || | || ||||| | |||||||||||||||||||||||||||| || ||||||| |||| ||   ||||||  |||||||||    
T  30040288 ttgctactaaaactgccgaatttacggttgaagctattggtcgtcaatttggttacatactttattacaagggcaaccttaccaggatgacaactgatgt 30040189  T
Q  147 ccaaaagctagaaggaacaaaagatagtgtgcaacgcaaagttgacgaggctagaaataatggagaagagattgaaaa 224  Q
    ||||    | || |||| |||||| | | |||||| ||| ||||| ||||  ||||  || |||||||||||||||||    
T  30040188 ccaacgtgtggagggaataaaagacattttgcaacacaatgttgatgaggtcagaaggaacggagaagagattgaaaa 30040111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 224
Target Start/End: Complemental strand, 30109766 - 30109589
Alignment:
Q  47 ttgctgctaaaattgctgagtatatggttgtacctattggtcgtcaatttggttacatactctactacaaggacaactttcaaaggatggaaactgatgt 146  Q
    ||||| |||||| ||| || | || ||||| | |||||||||||||||||||||||||||| || ||||||| |||| ||   ||||||  |||||||||    
T  30109766 ttgctactaaaactgccgaatttacggttgaagctattggtcgtcaatttggttacatactttattacaagggcaaccttaccaggatgacaactgatgt 30109667  T
Q  147 ccaaaagctagaaggaacaaaagatagtgtgcaacgcaaagttgacgaggctagaaataatggagaagagattgaaaa 224  Q
    ||||    | || |||| |||||| | | |||||| ||| ||||| ||||  ||||  || |||||||||||||||||    
T  30109666 ccaacgtgtggagggaataaaagacattttgcaacacaatgttgatgaggtcagaaggaacggagaagagattgaaaa 30109589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 224
Target Start/End: Complemental strand, 30234426 - 30234249
Alignment:
Q  47 ttgctgctaaaattgctgagtatatggttgtacctattggtcgtcaatttggttacatactctactacaaggacaactttcaaaggatggaaactgatgt 146  Q
    ||||| |||||| ||| || | || ||||| | |||||||||||||||||||||||||||| || ||||||| |||| ||   ||||||  |||||||||    
T  30234426 ttgctactaaaactgccgaatttacggttgaagctattggtcgtcaatttggttacatactttattacaagggcaaccttaccaggatgacaactgatgt 30234327  T
Q  147 ccaaaagctagaaggaacaaaagatagtgtgcaacgcaaagttgacgaggctagaaataatggagaagagattgaaaa 224  Q
    ||||    | || |||| |||||| | | |||||| ||| ||||| ||||  ||||  || |||||||||||||||||    
T  30234326 ccaacgtgtggagggaataaaagacattttgcaacacaatgttgatgaggtcagaaggaacggagaagagattgaaaa 30234249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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