View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11016_low_5 (Length: 575)
Name: NF11016_low_5
Description: NF11016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11016_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 327 - 570
Target Start/End: Original strand, 43336081 - 43336324
Alignment:
| Q |
327 |
agaagtatagatagcaaataaagaagaaaagtattaggagtgttcatcactccacacttgcataaacaacataaaaagctgtctgtgtcttaaatcttaa |
426 |
Q |
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| T |
43336081 |
agaagtatagatagcaaataaagaagaaaagtattaggagtgttcatcacttcacacttgcacagacaacataaaaagctggctgtgtcttaaatcttaa |
43336180 |
T |
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| Q |
427 |
ttgttgaacttgacatggacttggactgagtctgactgaacacgccactaatcactcgtttgcaaccattttctaactcaacttggaaaacacgtatcaa |
526 |
Q |
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| T |
43336181 |
ttgttgaacttgacatggacttggactgagtctgactgaacacgccactaatcactcgtttgcaaccattttctaactcaacttggaaaacacgtatcaa |
43336280 |
T |
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| Q |
527 |
cattaactttcctttacatgaagtatgagaagaacaagagtgaa |
570 |
Q |
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| T |
43336281 |
cattaactttccatgccatgaagtatgagaagaacaagagtgaa |
43336324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 43340664 - 43340743
Alignment:
| Q |
9 |
agcagagacaaagacataggacagaacaaaaacaatagtaggaaagtggttgtgtaatcatacctgatcatgttcatgtt |
88 |
Q |
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|||| ||||||| ||||||||||||||||||||| ||||| |||||||||||||| |||||||||| |||||||||||| |
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| T |
43340664 |
agcaaagacaaaaccataggacagaacaaaaacaagagtagtaaagtggttgtgtattcatacctgagcatgttcatgtt |
43340743 |
T |
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