View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11016_low_9 (Length: 487)
Name: NF11016_low_9
Description: NF11016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11016_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 479
Target Start/End: Complemental strand, 17435147 - 17434679
Alignment:
| Q |
19 |
attattcttgttacatgtatgtaagaaagagcatgtgagcatgattgtgcacattgttatgatgaatcggtattgtccttcggttttcagtttattttga |
118 |
Q |
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| T |
17435147 |
attattcttgttacatgtatgtaagaaagagcatgtgagcatgattgtgcacattgttatgatgaatcggtattgtccttcggttttcagtttattttga |
17435048 |
T |
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| Q |
119 |
atgccaaaaaagtgattgagataaagtggttaatgatttccaccnnnnnnnncattatttagaagaattcgagtttaattgttggatgaaataatttttt |
218 |
Q |
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| T |
17435047 |
atgccaaaaaagtgattgagataaagtggttaatgatttccaccaaaaaaaatattatttgaaagaattcgagtttaattgttggatgaaataatttttt |
17434948 |
T |
|
| Q |
219 |
attaactttacttatctcgtgggctaaccccgaattactagaaatcccttaccttaggaaccggcgagttat-------nnnnnnnnngtttattttgaa |
311 |
Q |
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| T |
17434947 |
attaactttatttatctcgtgggctaaccccggattactagaaatcccttaccttaggaaccggcgagttataaaaaaaaaaaaaaaggtttattttgaa |
17434848 |
T |
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| Q |
312 |
cgcatttcaatatctcacaa-nnnnnnnaaatatttacacagcagattaataagaaatgtaaattnnnnnnntaggcattacgaactagttctttttgtc |
410 |
Q |
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| T |
17434847 |
cgcatttcaatatctcacaattttttttaaatatttacacagcagattaataagaaatgtaaattaaaaaaataggcattacgaactagttctttttgtc |
17434748 |
T |
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| Q |
411 |
ctttagtggtttaccttgatgaccaggtaaatcttgaaactagttgttattccttgtgcttttcttctc |
479 |
Q |
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| T |
17434747 |
ctttagtggtttaccttgatgaccaggtaaatcttgaaactagttgttattccttgtgcttttcttctc |
17434679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 403 - 478
Target Start/End: Original strand, 26330962 - 26331037
Alignment:
| Q |
403 |
tttttgtcctttagtggtttaccttgatgaccaggtaaatcttgaaactagttgttattccttgtgcttttcttct |
478 |
Q |
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|||||||| ||||||| ||| |||| ||||||| |||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
26330962 |
tttttgtcatttagtgttttgccttaatgaccaagtaactcttgaaactagttgttattccttgtgattttcttct |
26331037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 471
Target Start/End: Original strand, 25428125 - 25428193
Alignment:
| Q |
403 |
tttttgtcctttagtggtttaccttgatgaccaggtaaatcttgaaactagttgttattccttgtgctt |
471 |
Q |
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| T |
25428125 |
tttttgtcctttaatggcttgccttggtgaccaagaaacttttaaaaatagttgttattccttgtgctt |
25428193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 28568813 - 28568768
Alignment:
| Q |
172 |
attatttagaagaattcgagtttaattgttggatgaaataattttt |
217 |
Q |
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| T |
28568813 |
attatttagaagaattcgattttaacttttggatgaaataattttt |
28568768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 472
Target Start/End: Original strand, 8714405 - 8714473
Alignment:
| Q |
404 |
ttttgtcctttagtggtttaccttgatgaccaggtaaatcttgaaactagttgttattccttgtgcttt |
472 |
Q |
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| T |
8714405 |
ttttttcctttagtgccttaccttgatgacaaagtaactcttgaaactagtgtttattccttgtacttt |
8714473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 472
Target Start/End: Original strand, 9066292 - 9066360
Alignment:
| Q |
404 |
ttttgtcctttagtggtttaccttgatgaccaggtaaatcttgaaactagttgttattccttgtgcttt |
472 |
Q |
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|||| |||||||||| ||||||||||||| | |||| ||||||||||||| ||||||||||| |||| |
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| T |
9066292 |
ttttttcctttagtgccttaccttgatgacaaagtaactcttgaaactagtgtttattccttgtacttt |
9066360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 12639720 - 12639667
Alignment:
| Q |
182 |
agaattcgagtttaattgttggatgaaataattttttatt-aactttacttatc |
234 |
Q |
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| T |
12639720 |
agaattcgagtttaatttttggacggaataattttttattcgactttacttatc |
12639667 |
T |
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