View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11017_high_2 (Length: 487)
Name: NF11017_high_2
Description: NF11017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11017_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 114 - 457
Target Start/End: Complemental strand, 53679606 - 53679263
Alignment:
| Q |
114 |
tacctgcttaatcaacattgaatcacctttcttactttcgtttgattttcttgaaaatccatccatttagatcagaaatagaacctaattgaattgattt |
213 |
Q |
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| T |
53679606 |
tacctgcttaatcaacaccgaatcacctttcttactttcgtttgattttcttgaaaatccatccatttagatcagaaatagaacctaattgaattgattt |
53679507 |
T |
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| Q |
214 |
tacatgcttaatcaactcccttcatgattcttgaattgtttgattgaaagattggtaaaaagtttcaattttgttcaccacgtttaacgttttaaatatg |
313 |
Q |
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| T |
53679506 |
tacatgcttaatcaactcccttcatgattcttgaattgtttgattgaaagattggtaaaaaatttcaattttgttcaccatgtttaacgttttaaatatg |
53679407 |
T |
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| Q |
314 |
tcatgtttcagttctgtttttaagctagttatattctggttcaatttcacttcttgttaaaacagttcagttagtaaccagaccttttcatatggttcag |
413 |
Q |
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| T |
53679406 |
ttatgtttcagttttgtttttaagctagttatattctggttcaatttcagttcttgttaaaacagttcagttagtaaccagaccttttcatatggttcag |
53679307 |
T |
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| Q |
414 |
tctgaacatttataaaccagtttagtttaataacagtttggttc |
457 |
Q |
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| T |
53679306 |
tctgaacatttataaaccagtttagttcaataacagtttggttc |
53679263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 414
Target Start/End: Original strand, 2045022 - 2045066
Alignment:
| Q |
370 |
ttaaaacagttcagttagtaaccagaccttttcatatggttcagt |
414 |
Q |
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| T |
2045022 |
ttaaaacagttcagctaataaccaatccttttcatatggttcagt |
2045066 |
T |
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