View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11017_high_3 (Length: 385)
Name: NF11017_high_3
Description: NF11017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11017_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 21 - 381
Target Start/End: Complemental strand, 49019210 - 49018853
Alignment:
| Q |
21 |
catcatcaaattcaataaataattccaacccagatataaaatttaaacttcagaaaaatcaagtaaaaaggccacatacctgacattctctattttcact |
120 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49019210 |
catcatcaaattcaataaataattccaacccagatgtaaaac--aaacttcagaaaaatcaagtaaaaaggccacatacctgacattctctattttcact |
49019113 |
T |
|
| Q |
121 |
aatcaattcaccagaagttgaattcgatgaaatccctacaccaattttcctggacaaaaccaaacaacgacccaaatccnnnnnnnnnnnnnnnnntcac |
220 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
49019112 |
aatcaattcaccagaagttgaattcgatgaaatccctacatcaattttcctggacaaaaccaaacaacaacccaaatcc-aaaaaaagtaaaaaaatcac |
49019014 |
T |
|
| Q |
221 |
cattggtaatgnnnnnnntggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagccaaacctctactttgtaccatcct |
320 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49019013 |
cattgataatcaaaaaaatggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagccaaacctctactttgtaccatcct |
49018914 |
T |
|
| Q |
321 |
ccaattaattggttttgatcaccaacacaactcacaaacagttccaaaatcaaccatgcat |
381 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
49018913 |
ccaattaattggttctgatcaccaacacaacacacaaacagttccaaaatcactcatgcat |
49018853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 21 - 374
Target Start/End: Complemental strand, 8345314 - 8344962
Alignment:
| Q |
21 |
catcatcaaattcaataaataattccaacccagatataaaatttaaacttcagaaaaatcaagtaaaaaggccacatacctgacattctctattttcact |
120 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||| |
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| T |
8345314 |
catcatcaaattcaataaataattccaaaccagatataaaatttaaacttcagaaaaattaattaaaaaggccacatacctgacattctatattttcacc |
8345215 |
T |
|
| Q |
121 |
aatcaattcaccagaagttgaattcgatgaaatccctacaccaattttcctggacaaaaccaaacaacgacccaaatccnnnnnnnnnnnnnnnnntcac |
220 |
Q |
| |
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|||||||||| ||||||||||||| || |||||||||||| ||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
8345214 |
aatcaattcatcagaagttgaattggacgaaatccctacatcaattttcctggacaaaaccaaacaacaacccaaatcc-aaaaaaagtaaaaaagtcac |
8345116 |
T |
|
| Q |
221 |
cattggtaatgnnnnnnntggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagccaaacctctactttgtaccatcct |
320 |
Q |
| |
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||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8345115 |
cattgataatcaagaaaatggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagtcaaacctctactttgtaccatcct |
8345016 |
T |
|
| Q |
321 |
ccaattaattggttttgatcaccaacacaactcacaaacagttccaaaatcaac |
374 |
Q |
| |
|
|||||||||||||| || ||||||||||||| |||||||||||||||||||||| |
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|
| T |
8345015 |
ccaattaattggttctggtcaccaacacaacacacaaacagttccaaaatcaac |
8344962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 239 - 374
Target Start/End: Original strand, 42824544 - 42824679
Alignment:
| Q |
239 |
tggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagccaaacctctactttgtaccatcctccaattaattggttttga |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
42824544 |
tggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagtcaaacctctactttgtaccatcctccaattaattggttctgg |
42824643 |
T |
|
| Q |
339 |
tcaccaacacaactcacaaacagttccaaaatcaac |
374 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
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|
| T |
42824644 |
tcaccaacacaacacacaaacagttccaaaatcaac |
42824679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 21 - 175
Target Start/End: Original strand, 42824300 - 42824454
Alignment:
| Q |
21 |
catcatcaaattcaataaataattccaacccagatataaaatttaaacttcagaaaaatcaagtaaaaaggccacatacctgacattctctattttcact |
120 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||| |
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|
| T |
42824300 |
catcatcaaattcaataaataattccaaaccagatataaaatttaaacttcagaaaaattaattaaaaaggccacatacctgacattctatattttcacc |
42824399 |
T |
|
| Q |
121 |
aatcaattcaccagaagttgaattcgatgaaatccctacaccaattttcctggac |
175 |
Q |
| |
|
|||||||||| ||||||||||||| || |||||||||||| |||||||||||||| |
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|
| T |
42824400 |
aatcaattcatcagaagttgaattggacgaaatccctacatcaattttcctggac |
42824454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 199
Target Start/End: Original strand, 42824455 - 42824505
Alignment:
| Q |
149 |
gaaatccctacaccaattttcctggacaaaaccaaacaacgacccaaatcc |
199 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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|
| T |
42824455 |
gaaatccctacatcaattttcctggacaaaaccaaacaacaacccaaatcc |
42824505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 50861337 - 50861266
Alignment:
| Q |
98 |
acctgacattctctattttcactaatcaattcaccagaagttgaattcgatgaaatccctacaccaattttc |
169 |
Q |
| |
|
||||| |||||||||||| ||| |||||||||||||| |||||||||||| |||||||| ||| |||||||| |
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| T |
50861337 |
acctggcattctctatttccaccaatcaattcaccagtagttgaattcgacgaaatcccaacatcaattttc |
50861266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 181
Target Start/End: Original strand, 39073745 - 39073828
Alignment:
| Q |
98 |
acctgacattctctattttcactaatcaattcaccagaagttgaattcgatgaaatccctacaccaattttcctggacaaaacc |
181 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||| |||| ||||| || |||||| ||| ||||||||||| |||||||| |
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|
| T |
39073745 |
acctgacattctctatttccatcaatcaattcaccaaaagtcgaatttgacaaaatccaaacatcaattttcctgcacaaaacc |
39073828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 181
Target Start/End: Original strand, 36588096 - 36588179
Alignment:
| Q |
98 |
acctgacattctctattttcactaatcaattcaccagaagttgaattcgatgaaatccctacaccaattttcctggacaaaacc |
181 |
Q |
| |
|
|||||||| ||||||| | | | |||||||||||||||||| ||||| || |||||||| | | ||||||||||| |||||||| |
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|
| T |
36588096 |
acctgacaatctctatatccgccaatcaattcaccagaagtcgaatttgacgaaatcccaagatcaattttcctgcacaaaacc |
36588179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 56
Target Start/End: Complemental strand, 30331070 - 30331035
Alignment:
| Q |
21 |
catcatcaaattcaataaataattccaacccagata |
56 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
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|
| T |
30331070 |
catcatcaaattcaataaataattccgacccagata |
30331035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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