View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11017_high_4 (Length: 339)
Name: NF11017_high_4
Description: NF11017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11017_high_4 |
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| [»] scaffold1717 (1 HSPs) |
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| [»] scaffold1527 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 87 - 319
Target Start/End: Complemental strand, 37757501 - 37757269
Alignment:
| Q |
87 |
gattatgggaagccgtggattcggtgcgacgaagagaagttctaatgggaagcttggaagtgtgagtgattattgtgttcgtcattgtgtttgtcctgtt |
186 |
Q |
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| T |
37757501 |
gattatgggaagccgtggattcggtgcgacgaagagaagttctaatgggaagcttggaagtgtgagtgattattgtgttcgtcattgtgtttgtcctgtt |
37757402 |
T |
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| Q |
187 |
gtagttgtaaggtatccggaggagagtaatggcggcggcgccggagttgaagggaatgatggtgaaaaagttgaacttcatcctgttattgaggaagaac |
286 |
Q |
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| T |
37757401 |
gtagttgtaaggtatccggaggagagtaatggcggtggcgccggagttgaagggaatgatggtgaaaaagttgaacttcatcctgttattgaggaagaac |
37757302 |
T |
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| Q |
287 |
atgaagatgagtatcatgatgctgatgatgatg |
319 |
Q |
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| T |
37757301 |
atgaagatgagtatcatgatgctgatgatgatg |
37757269 |
T |
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Target: scaffold1717 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1717
Description:
Target: scaffold1717; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 460 - 397
Alignment:
| Q |
131 |
atgggaagcttggaagtgtgagtgattattgtgttcgtcattgtgtttgtcctgttgtagttgt |
194 |
Q |
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| T |
460 |
atgggaagcttgggagtgttagtgattactgtgtgcatcattgtgtttgtcctgttgttgttgt |
397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1527 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1527
Description:
Target: scaffold1527; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 706 - 643
Alignment:
| Q |
131 |
atgggaagcttggaagtgtgagtgattattgtgttcgtcattgtgtttgtcctgttgtagttgt |
194 |
Q |
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| T |
706 |
atgggaagcttgggagtgttagtgattactgtgtgcatcattgtgtttgtcctgttgttgttgt |
643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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