View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11017_high_9 (Length: 301)
Name: NF11017_high_9
Description: NF11017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11017_high_9 |
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| [»] scaffold0368 (1 HSPs) |
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Alignment Details
Target: scaffold0368 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0368
Description:
Target: scaffold0368; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 29 - 214
Target Start/End: Original strand, 1496 - 1681
Alignment:
| Q |
29 |
gttccttcatccacgtgattttatcatttgaaactgaatcaaacagaggtgtgtcgagaataaatgtcattgtctcagctgaaaacaaagaatcaagctt |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1496 |
gttccttcatccacgtgattttatcatttgaaactgaatcaaacagaggtgtgtcgagaataaatgtcattgtctcagctgaaaacaaagaatcaagctt |
1595 |
T |
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| Q |
129 |
tgtaacatcccatctgtgtttctccaacaatcattaaatcacaaacaaacaaattatgcacaccttgatttttgtggtcagtgaac |
214 |
Q |
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| T |
1596 |
tgtaacatcccatctgtgtttctccaacaatcattaaatcacaaacaaacaaattatgcacaccttgatttttgtggtgagtgaac |
1681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 29 - 214
Target Start/End: Original strand, 38296133 - 38296318
Alignment:
| Q |
29 |
gttccttcatccacgtgattttatcatttgaaactgaatcaaacagaggtgtgtcgagaataaatgtcattgtctcagctgaaaacaaagaatcaagctt |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38296133 |
gttccttcatccacgtgattttatcatttgaaactgaatcaaacagaggtgtgtcgagaataaatgtcattgtctcagctgaaaacaaagaatcaagctt |
38296232 |
T |
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| Q |
129 |
tgtaacatcccatctgtgtttctccaacaatcattaaatcacaaacaaacaaattatgcacaccttgatttttgtggtcagtgaac |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38296233 |
tgtaacatcccatctgtgtttctccaacaatcattaaatcacaaacaaacaaattatgcacaccttgatttttgtggtgagtgaac |
38296318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 29358265 - 29358218
Alignment:
| Q |
224 |
ctgtggtattgatgcttgtgctataatctatagtccatacgatcctca |
271 |
Q |
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| T |
29358265 |
ctgtggtattgatgcttgtgctataatctatagtccatacgatcctca |
29358218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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