View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11018_high_1 (Length: 594)
Name: NF11018_high_1
Description: NF11018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11018_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 542; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 19 - 581
Target Start/End: Original strand, 11975562 - 11976124
Alignment:
| Q |
19 |
aagtagatgacatgtcagtggtattgaggaattccacatcataaatccaaatttgaaggccgaagtgagctttgacttgctcatcctcacaaataagacg |
118 |
Q |
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| T |
11975562 |
aagtagatgacatgtcagtggtattgaggaattccacatcataaatccaaatttgaaggccgaagtgagctttgacttgctcatcctcacaaataagacg |
11975661 |
T |
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| Q |
119 |
ggcaagttttgtcttccctattcctgcgaacccaacaatggaaaccacagaaactttcccaacggattcagctcctgtgtggagcgggataagttgatct |
218 |
Q |
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| T |
11975662 |
ggcaagttttgtcttccctattcctgcgaacccaacaatggaaaccacagaaactttcccaacggattcagctcctgtgtggagcgggataagttgatct |
11975761 |
T |
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| Q |
219 |
ataatttcnnnnnnnctcccaactatagccggttccaactccgtctcctcccccgtcttctcccatgcttcttgaggcggcatagttgcagtggtggtcg |
318 |
Q |
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| T |
11975762 |
ataatttctttttttctcccaactatagccggttccaactccgtctcctcccccgtcttctcccatgcttcttgaggcggcatagttgcagtggtggtcg |
11975861 |
T |
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| Q |
319 |
tggacaattcttttaaaacatctttgagatcttttatggcattttgaattcttgagttgatggctttaagctgatgcttatgacgatcggcttgaaacgg |
418 |
Q |
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| T |
11975862 |
tggacaattcttttaaaacatctttgagatcttttatggcattttgaattcttgagttgatggctttaagctgatgcttatgacgatcggcttgaaacgg |
11975961 |
T |
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| Q |
419 |
agagaaagttcttttctgaggcttaagaataccggcatcgagttcctccaccaatttgttcagatctttgagggcagttttaaggttggacagaacctca |
518 |
Q |
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| T |
11975962 |
agagaaagttcttttctgaggcttaagaataccggcatcgagttcctccaccaatttgttcagatctttgagggcagttttaaggttggacagaacctca |
11976061 |
T |
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| Q |
519 |
tgacgttggacgtggttcttaaccaggtcttggattttttcaagagaagttataagttggttc |
581 |
Q |
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| T |
11976062 |
tgacgttggacgtggttcttaaccaggtcttggattttttcaagagaagttataagttggttc |
11976124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 87 - 142
Target Start/End: Complemental strand, 11730896 - 11730841
Alignment:
| Q |
87 |
gctttgacttgctcatcctcacaaataagacgggcaagttttgtcttccctattcc |
142 |
Q |
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| T |
11730896 |
gctttgacttgctcatcctcgcaaacaagccgtgcaagttttgtcttccctattcc |
11730841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 11730452 - 11730395
Alignment:
| Q |
87 |
gctttgacttgctcatcctcacaaataagacgggcaagttttgtcttccctattcctg |
144 |
Q |
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| T |
11730452 |
gctttgacttgctcatccttgcaaacaagacgtgcaagttttgtctttcctattcctg |
11730395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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