View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11018_high_10 (Length: 353)

Name: NF11018_high_10
Description: NF11018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11018_high_10
NF11018_high_10
[»] chr4 (1 HSPs)
chr4 (104-345)||(10340888-10341129)
[»] chr5 (2 HSPs)
chr5 (111-191)||(30495521-30495601)
chr5 (111-191)||(30535864-30535944)


Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 104 - 345
Target Start/End: Original strand, 10340888 - 10341129
Alignment:
Q  104 actattgaatcgaccccacaaatattttcaatgatctttagaaaatggatctatgttcagctgcaacctattccagtgcaaaacttcttgatatataaaa 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10340888 actattgaatcgaccccacaaatattttcaatgatctttagaaaatggatctatgttcagctgctacctattccagtgcaaaacttcttgatatataaaa 10340987  T
Q  204 tcattaattacatattcaaaatggttctgaggtaaatgttagttaatcttgtctatcgttgataagtccatattggtttatttattttcttattcttact 303  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10340988 tcattaattacatattcaaaatggttctgaagtaaatgttagttaatcttgtctatcgttgataagtccagattggtttatttattttcttattcttact 10341087  T
Q  304 tctaatcggttcagtaagggaacgtgtattgaatattcatct 345  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  10341088 tctaatcggttcagtaagggaacgtgtattgaatattcatct 10341129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 30495601 - 30495521
Alignment:
Q  111 aatcgaccccacaaatattttcaatgatctttagaaaatggatctatgttcagctgcaacctattccagtgcaaaacttct 191  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||  |||||||||    
T  30495601 aatcgacccgacaaatattttcaatgatctttagaaaatggatctatgttcagttgctacctattccagtagaaaacttct 30495521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 30535944 - 30535864
Alignment:
Q  111 aatcgaccccacaaatattttcaatgatctttagaaaatggatctatgttcagctgcaacctattccagtgcaaaacttct 191  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||  |||||||||    
T  30535944 aatcgacccgacaaatattttcaatgatctttagaaaatggatctatgttcagttgctacctattccagtagaaaacttct 30535864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University