View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11018_high_2 (Length: 571)
Name: NF11018_high_2
Description: NF11018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11018_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 9967345 - 9967718
Alignment:
| Q |
1 |
tcgtttactacttgatgtccatctgtctttaggagatgattttgatcatttatcttctattttatgtactgcttgcagattctaccgtggacttgttcca |
100 |
Q |
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| T |
9967345 |
tcgtttactacttgatgtccatctgtctttaggagatgattttgatcatttatcttctattttatgtactgcttgcagattctaccgtggacttgttcca |
9967444 |
T |
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| Q |
101 |
cttttgggtcgaaacattccatgtaatttcattatctctgaaactttatttaatcttgcatagtttgggctatacaactttatatttaaaaattaacgaa |
200 |
Q |
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| T |
9967445 |
cttttgggtcgaaacattccatgtaatttcattatctctgaaactttatttaatcttgcatagtttgggctatacaactttatatttaaaaattaacgaa |
9967544 |
T |
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| Q |
201 |
acatgaacactatctttatgctggctgccattctatcttgtgaaatcttccagcatataatatatctgtatgcttgaagatgtttagctgnnnnnnnntc |
300 |
Q |
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| T |
9967545 |
acttgaacactatctttatgctggctgccattctatcttgtgaaatcttccagcatataatatatctgtatgcttaaagatgtttagctgaaaaaaaatc |
9967644 |
T |
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| Q |
301 |
tattaaatttttacgccttgcttttctctttggtatatgttttggtatctttatcatatctggcctacttaacg |
374 |
Q |
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| T |
9967645 |
tattaaatttttacgccttgcttttctctttggtatatgttttggtatctttatcatatctgacctacttaacg |
9967718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 193 - 555
Target Start/End: Original strand, 9967713 - 9968075
Alignment:
| Q |
193 |
ttaacgaaacatgaacactatctttatgctggctgccattctatcttgtgaaatcttccagcatataatatatctgtatgcttgaagatgtttagctgnn |
292 |
Q |
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| T |
9967713 |
ttaacgaaacttgaacactatctttatgctggctgccattctatcttgtgaaatcttccagcatataatatatctgtatgcttaaagatgtttagctgaa |
9967812 |
T |
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| Q |
293 |
nnnnnntctattaaatttttacgccttgcttttctctttggtatatgttttggtatctttatcatatctggcctacttaacgtctggaaattttcttcat |
392 |
Q |
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| T |
9967813 |
aaaaaatctattaaatttttacgccttgcttttctctttggtatatgttttggtatctttatcatatctgacctacttaacgtctggaaattttcttcat |
9967912 |
T |
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| Q |
393 |
ttgcttatgctgaatcatttatcgttagtcgcatgctgaggcctgagaaactatttgattgatcaggttatagagcattagttacctgttggttgataaa |
492 |
Q |
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| T |
9967913 |
ttgcttatgctgaatcatttatcgttagtcgcatgcttaggcctgagaaactatttgattgatcaggttatagagcattagttacctgttggttgataaa |
9968012 |
T |
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| Q |
493 |
ttaacaaaagatttttaatgctaaagtaacattagcttttataagctatgcatgctaagtatt |
555 |
Q |
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| T |
9968013 |
ctaacaaaagatttttaatgctaaagtaacattagcttttataacctatgcatgctaagtatt |
9968075 |
T |
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