View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11018_high_23 (Length: 242)
Name: NF11018_high_23
Description: NF11018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11018_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 5e-71; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 35941467 - 35941272
Alignment:
| Q |
18 |
agaaggtttctctttatgcttgtttaatactcaacttgagtttattggttatttttccatatagcaaagctagtcaagctgataaacttaatgagtttat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
35941467 |
agaaggtttctctttatgcttgtttaatactcaacttgagtttattggttatttttccatatagcaaagctagtcaagctgataaactcaatgagtttat |
35941368 |
T |
|
| Q |
118 |
tctgtctaggagctcacaaaatcctcctaagtctctttcttgggaagaggaagatgcattgaaaacaatttcctcttcagctgcttctgtagcacc |
213 |
Q |
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||||||||| | || || |||||||| ||| |||||||||||||||||| |||||||||||||||| ||| ||||| ||||||| ||| ||||| |
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| T |
35941367 |
tctgtctagaaaatctcagaatcctcccaagactctttcttgggaagagggagatgcattgaaaacacttttttcttcggctgcttatgttgcacc |
35941272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 35911946 - 35911733
Alignment:
| Q |
18 |
agaaggtttctctttatgcttgtttaatactcaacttgagtttattggttatttttccatatagcaaagctagtcaagctgataaacttaatgagtttat |
117 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
35911946 |
agaaggtttctctttatgcttgtttactactcaacttgagtctattggttatttttccatattgcaaagctagtcaagctgataaacttgttgagtttat |
35911847 |
T |
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| Q |
118 |
tctgtctaggagctcacaaaatcctcctaagtctctttcttgggaagaggaagatgcattgaaaacaatttcctc---ttcagctgcttctgtagcacct |
214 |
Q |
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||||||||| | |||||| |||||||||||| ||||||| ||||||||||||||||||||||||||| ||| || ||| ||||| ||| |||||| |
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| T |
35911846 |
tctgtctagaacctcacagaatcctcctaagactctttcatgggaagaggaagatgcattgaaaacacattcttcgttttctactgctgatgttgcacct |
35911747 |
T |
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| Q |
215 |
caagaggggctaat |
228 |
Q |
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|||||||||||||| |
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| T |
35911746 |
caagaggggctaat |
35911733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 35929274 - 35929116
Alignment:
| Q |
18 |
agaaggtttctctttatgcttgtttaatactcaacttgagtttattggttatttttccatatagcaaagctagtcaagctgataaacttaatgagtttat |
117 |
Q |
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|||||||||||||||||||||||||| |||||| | ||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
35929274 |
agaaggtttctctttatgcttgtttactactcagcgtgagttttttggttatttttccatatagcaaagctagtcaaactgataaacttgatgagtttat |
35929175 |
T |
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| Q |
118 |
tctgtctaggagctcacaaaatcctcctaagtctctttcttgggaagaggaagatgcat |
176 |
Q |
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||| ||||| | |||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
35929174 |
tctttctagaacctcacagaatcctcctaagactctttcttgggaagaggaagatgcat |
35929116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 24 - 227
Target Start/End: Complemental strand, 35935911 - 35935705
Alignment:
| Q |
24 |
tttctctttatgcttgtttaatactcaacttgagtttattggttatttttccatatagcaaagctagtcaagctgataaacttaatgagtttattctgtc |
123 |
Q |
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|||||||||||||||||||| |||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||| ||||| || ||||||| |
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| T |
35935911 |
tttctctttatgcttgtttattactcaacttgagtctcttggttatttttccttatagcaaagctagtcaagctgataaacttgatgagctttttctgtc |
35935812 |
T |
|
| Q |
124 |
taggagctcacaaaatcctcctaagtctctttcttgggaagaggaagatgcattgaaaacaatttcctcttcagctgcttctgt---agcacctcaagag |
220 |
Q |
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||| | ||||| |||||||| ||| |||||||||||||||||| ||| |||||||||||| |||| ||||| ||||||| ||| ||||||||||||| |
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| T |
35935811 |
tagaaaatcacagaatcctcccaagactctttcttgggaagagggagaagcattgaaaacactttcttcttctgctgcttatgttgcagcacctcaagag |
35935712 |
T |
|
| Q |
221 |
gggctaa |
227 |
Q |
| |
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| ||||| |
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| T |
35935711 |
gagctaa |
35935705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 35922602 - 35922407
Alignment:
| Q |
18 |
agaaggtttctctttatgcttgtttaatactcaacttgagtttattggttatttttccatatagcaaagctagtcaagctgataaacttaatgagtttat |
117 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
35922602 |
agaaggtttctctttatgcttgtttattactcaacttgagccttttggttatttttccatatagcaaagctagtcaagctgataaactcaatgagtttat |
35922503 |
T |
|
| Q |
118 |
tctgtctaggagctcacaaaatcctcctaagtctctttcttgggaagaggaagatgcattgaaaacaatttcctcttcagctgcttctgtagcacc |
213 |
Q |
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||||||||| | || || |||||||| ||| | |||||||||||||||| |||||||||||||||| ||| | ||| ||||||| ||| ||||| |
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| T |
35922502 |
tctgtctagaaaatctcagaatcctcccaagacactttcttgggaagagggagatgcattgaaaacacattctttttctgctgcttatgttgcacc |
35922407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 35916336 - 35916138
Alignment:
| Q |
18 |
agaaggtttctctttatgcttgtttaatactcaacttga---gtttattggttatttttccatatagcaaagctagtcaagctgataaacttaatgagtt |
114 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||| || | |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35916336 |
agaaggtttctctttatgcttgtttattactcaatttgatcagtcttttggttatttttccatatagcaaagctagtcaagctgataaactcaatgagtt |
35916237 |
T |
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| Q |
115 |
tattctgtctaggagctcacaaaatcctcctaagtctctttcttgggaagaggaagatgcattgaaaacaatttcctcttcagctgcttctgtagcacc |
213 |
Q |
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|||||||||||| | || || |||||||||||| | |||||||||||||||| |||||||||||||||| ||| | ||| ||||||| ||| ||||| |
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| T |
35916236 |
tattctgtctagaaaatctcagaatcctcctaagacactttcttgggaagagggagatgcattgaaaacacattctttttctgctgcttatgttgcacc |
35916138 |
T |
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