View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11018_high_3 (Length: 536)
Name: NF11018_high_3
Description: NF11018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11018_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 20 - 528
Target Start/End: Original strand, 44155095 - 44155591
Alignment:
| Q |
20 |
agatccgttgaattccttacacttgtgaattaatttggtgtttctttgattctctcatttaaatatgcatacaggcatgagtgttaatattaattctatc |
119 |
Q |
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| T |
44155095 |
agatccgttgaattccttacacttgtgaattaatttggtgtttctttgattctctcatttaaatatgcatacaggcatgagtgttaatattaattctatc |
44155194 |
T |
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| Q |
120 |
gaatcttgtgctacaagtcatgttgcaattaacactaaaaatgaatgaagtgattgtagagaatcgagtgatgcaggcttctatgaaaatttaatttcca |
219 |
Q |
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| T |
44155195 |
gaatcttgtgctacaagtcatgttgagattaacactaaaaatgaatgaagtgattgtagagaatcgagtgatgcaggcttctatgaaaatttaatttcca |
44155294 |
T |
|
| Q |
220 |
aaataatcctttactcaataagtttacgttgttatttgtttcaatgttatatatctagcaagaataactatcgctgcattaagtgtttatgcttttatgt |
319 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44155295 |
aaataatcctttactcaataagtttacggtgttatttgtttcaatgttatacatctagcaagaataactatcgctgcattaagtgtttatgcttttatgt |
44155394 |
T |
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| Q |
320 |
ggccggtatttctagtcctgcttcttaatagttttactctcactctgatttgcaggtgtctggaggaaggagcagagtttttctattgaagccagtcaag |
419 |
Q |
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| T |
44155395 |
ggccggtatttctagtcctgcttcttaatagttttactctcactctgatttgcaggtgtctggaggaaggagcagagtt------------ccagtcaag |
44155482 |
T |
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| Q |
420 |
ttgtcaggtgtcaagtgcttgaaagagttcatcatgagaggtgaagtgaaagttggtgaggaaagttttttgaaaagaatgcgatcatcagataagtgca |
519 |
Q |
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| T |
44155483 |
ttgtcaggtgtcaagtgcttgaaagagttcatcatgagaggtgaagtgaaagttggtgaggaaagttttttgaaaagaatgcgatcatcagataagtgca |
44155582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 292 - 420
Target Start/End: Complemental strand, 40894457 - 40894330
Alignment:
| Q |
292 |
gctgcattaagtgtttatgcttttatgtggccggtatttctagtcctgcttcttaatagttttactctcactctgatttgcaggtgtctggaggaaggag |
391 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
40894457 |
gctgcattaagtgtttatgcttttatgtggccaatatttctagtcatgcttcttaatagttttactctca--ctgatttgcaggtgcctggaggaaggag |
40894360 |
T |
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| Q |
392 |
caga-gtttttctattgaagccagtcaagt |
420 |
Q |
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| T |
40894359 |
cagaggtttttctattgaagccagtcaagt |
40894330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 307 - 512
Target Start/End: Original strand, 44214434 - 44214638
Alignment:
| Q |
307 |
tatgcttttatgtggccggtatttctagtcctgcttcttaatagttttactctcactctgatttgcaggtgtctggaggaaggagcagagt-ttttctat |
405 |
Q |
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|||||| ||| |||||| |||| || |||||||||||||||||||||| | ||||| |||||||||||| ||||||||||||||||| |||| | | |
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| T |
44214434 |
tatgctattaggtggccagtatatcctgtcctgcttcttaatagttttattttcacta--atttgcaggtgtttggaggaaggagcagaggattttttgt |
44214531 |
T |
|
| Q |
406 |
tgaagccagtcaagttgtcaggtgtcaagtgcttgaaagagttcatcatgagaggtgaagtgaaagttggtgaggaaagttttttgaaaagaatgcgatc |
505 |
Q |
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| ||||||||||| ||||||| ||| | || ||||||| ||||||||||||||||||||||| | ||| ||| || ||| | | |||||||||||||| |
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| T |
44214532 |
taaagccagtcaaattgtcagatgtaagacgcctgaaagatttcatcatgagaggtgaagtgaaggatggcgagaaatgttctctcaaaagaatgcgatc |
44214631 |
T |
|
| Q |
506 |
atcagat |
512 |
Q |
| |
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||||||| |
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| T |
44214632 |
atcagat |
44214638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 486
Target Start/End: Complemental strand, 40894326 - 40894279
Alignment:
| Q |
439 |
tgaaagagttcatcatgagaggtgaagtgaaagttggtgaggaaagtt |
486 |
Q |
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||||||| |||||||||||||||||||| |||| ||||||| |||||| |
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| T |
40894326 |
tgaaagatttcatcatgagaggtgaagtaaaagatggtgagaaaagtt |
40894279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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