View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11018_high_6 (Length: 490)
Name: NF11018_high_6
Description: NF11018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11018_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 53 - 480
Target Start/End: Original strand, 50140948 - 50141373
Alignment:
| Q |
53 |
acaactgccctccccctccttctccacctacttcctctggtggtggatcaagtggaggttcatactattactctccacctccacctcctccgtcatccag |
152 |
Q |
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| T |
50140948 |
acaactgccctccccctccttctccacctacttcctctggtggtggatcaagtggaggttcatactattactctccacctccacctcctccgtcatccag |
50141047 |
T |
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| Q |
153 |
tggcggaggaagttactattattaccctccacctagtaacagatactacggtccaactccaccgccacctaatccaattgttccttattttcctttctat |
252 |
Q |
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| T |
50141048 |
tggcggaggaagttactataattacc-tccacctagtaacagatactacggtccaactccaccgccacctaatccaattgttccttattttcctttctat |
50141146 |
T |
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| Q |
253 |
taccacagtcctccaccaccctcctccgcacctacttcgtctcgctcactcttcattccaattgttctctcgtccttcatcatgttgttgctttcataga |
352 |
Q |
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| T |
50141147 |
taccacagtcctccaccaccctcctccgcacctacttcgtctcgctcactcttcactccaattgttctctcgtccttcatcatgttgttgctttcataga |
50141246 |
T |
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| Q |
353 |
agaagnnnnnnntgaagctaaaaaaggaaaggattggaataactgcgtagatttgcagatctagctagaaattcttaggggagtgagagtggagaagtcg |
452 |
Q |
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| T |
50141247 |
agga-aaaaaaatgaagctaaaaaaggaaaggattggaataactgcgtagatttgcagatctagctagaaattcttaggggagtgagagtggagaagtcg |
50141345 |
T |
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| Q |
453 |
tcatcaaattcccgatttgccctctgtg |
480 |
Q |
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| T |
50141346 |
tcatcaaattcccgatttgccctctgtg |
50141373 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 13407642 - 13407590
Alignment:
| Q |
217 |
ccacctaatccaattgttccttattttcctttctattaccacagtcctccacc |
269 |
Q |
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| T |
13407642 |
ccaccaaatcctattgtaccttattttcctttctattaccacactccaccacc |
13407590 |
T |
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