View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11018_high_7 (Length: 416)
Name: NF11018_high_7
Description: NF11018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11018_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 15 - 396
Target Start/End: Complemental strand, 4760995 - 4760614
Alignment:
| Q |
15 |
caaagggtaacggtttcggagctgttgaaagtgttaaggcaacaagtgatgtaaactctccaatatctggtgagattgttgaagttaatgataagctcac |
114 |
Q |
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| T |
4760995 |
caaagggtaatggtttcggagctgttgaaagtgttaaggcaacaagtgatgtaaactctccaatatctggtgagattgttgaagttaatgataagctcac |
4760896 |
T |
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| Q |
115 |
tggaaaacctggcctggtaattcattcattcactcactcactctcatttttaggacaagaaggttaattacttaggaatgacttaagtacttattgaata |
214 |
Q |
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| T |
4760895 |
tggaaaacctggcctggtaattcattcattcactcactcactctcatttttaggacaagaaggttaattacttaggaatgacttaagtacttattgaata |
4760796 |
T |
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| Q |
215 |
taagagcttatgaataagttattttaatttacaatcaaatagagaataagaaactttgcaaagctaaagagataagtgaactagtggtgtatttttatga |
314 |
Q |
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| T |
4760795 |
taagagcttatgaataagttattttaatttacaatcaaatagagaataagaaactttgcaaagctaaagagataagtgaactagtggtgtatgtttatga |
4760696 |
T |
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| Q |
315 |
aaataagctgaaaacaacttacctcaaatagttacacaaatgtttatgtcatgacttatgaaataagtcaacatttaatgtc |
396 |
Q |
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| T |
4760695 |
aaataagctgaaaacaacttacctcaaatagttacacagatgtttatgtcatgacttatgaaataagtcaacatttaatgtc |
4760614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 336
Target Start/End: Complemental strand, 10272469 - 10272441
Alignment:
| Q |
308 |
tttatgaaaataagctgaaaacaacttac |
336 |
Q |
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| T |
10272469 |
tttatgaaaataagctgaaaacaacttac |
10272441 |
T |
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