View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11018_low_11 (Length: 352)
Name: NF11018_low_11
Description: NF11018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11018_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 2928856 - 2929180
Alignment:
| Q |
18 |
caaaagtcataaaatacctcatgtgcaattatagttgctttctctgcatcacttggaaaatgcctaatcaaatcccagcttagaactatcttcccattgg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2928856 |
caaaagtcataaaatacctcatgtgcaattatagttgctttctctgcatcacttggaaaatgcctaatcaaatcccagcttagaactatcttcccattgg |
2928955 |
T |
|
| Q |
118 |
gaaaacatccgacagacatattagttnnnnnnnctaccaaaacctcccaatttaatccatccaaatgtgaaatggtacactcagattcatggctcatttt |
217 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2928956 |
gaaaacatccgacagacatattagttaaaaaaactaccaaaacctcccaatttaatccatccaaatgtgaaatggtacactcagattcatggctcatttt |
2929055 |
T |
|
| Q |
218 |
gtttctctctctcagcaatgcatcaataatattgttgagaatctttgtaagccttacactttcttgatgggttggaggcattgtacgtccttcaaacctt |
317 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2929056 |
gtttctctctctcagcaatgcatcaataatattattgagaatctttgtaagccttacactttcttgatgggttggaggcattgtacgtccttcaaacctt |
2929155 |
T |
|
| Q |
318 |
tgtttgtattcttcaaagccctttg |
342 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
2929156 |
tgtttgtattcttcaaagccctttg |
2929180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 24 - 339
Target Start/End: Complemental strand, 2310176 - 2309867
Alignment:
| Q |
24 |
tcataaaatacctcatgtgcaattatagttgctttctctgcatcacttggaaaatgcctaatcaaatcccagcttagaactatcttcccattgggaaaac |
123 |
Q |
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||||||||||||||| ||||||||| ||||||||||||||||||||||||||| || ||| |||||||||||||||| ||||||||||||| | ||||| |
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| T |
2310176 |
tcataaaatacctcacgtgcaattaaggttgctttctctgcatcacttggaaaaggcttaaccaaatcccagcttagacctatcttcccattagcaaaac |
2310077 |
T |
|
| Q |
124 |
atccgacagacatattagttnnnnnnnctaccaaaacctcccaatttaatccatccaaatgtgaaatggtacactcagattcatggctcattttgtttct |
223 |
Q |
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|| | |||| |||| || | |||||| |||||||||||||||||||||||||||||| || || |||||| |||||||||| ||||| |
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| T |
2310076 |
atgtgccagatatataaggtaaaaaaactaccacaacctcccaatttaatccatccaaatgtgacatatta------gattcagggctcattttctttct |
2309983 |
T |
|
| Q |
224 |
ctctctcagcaatgcatcaataatattgttgagaatctttgtaagccttacactttcttgatgggttggaggcattgtacgtccttcaaacctttgtttg |
323 |
Q |
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||||| ||||||||||||| ||||| ||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
2309982 |
ttctctttgcaatgcatcaattatattattgagaatctttgtatgccttacactttcttgataggtttgaggcattgtacgtccttcaaacctttgtttg |
2309883 |
T |
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| Q |
324 |
tattcttcaaagccct |
339 |
Q |
| |
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|||||||||||||||| |
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| T |
2309882 |
tattcttcaaagccct |
2309867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 21959878 - 21959920
Alignment:
| Q |
29 |
aaatacctcatgtgcaattatagttgctttctctgcatcactt |
71 |
Q |
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||||||||||||| |||| ||||||||| |||||||||||||| |
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| T |
21959878 |
aaatacctcatgtccaataatagttgctatctctgcatcactt |
21959920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 904889 - 904847
Alignment:
| Q |
29 |
aaatacctcatgtgcaattatagttgctttctctgcatcactt |
71 |
Q |
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||||||||||||| |||| ||||||||| |||||||||||||| |
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| T |
904889 |
aaatacctcatgtccaataatagttgctatctctgcatcactt |
904847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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